YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGH_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGH_CAMJR.

Description	E-value	Query Range	Subject Range
FLGH_IDILO - Flagellar L-ring protein OS=Idiomarina loihiensis GN=flgH PE=3 SV=1 FLGH_IDILO - Flagellar L-ring protein OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=flgH ...	279.0	[0..1]	[232..1]
FLGH_SHESR - Flagellar L-ring protein OS=Shewanella sp. (strain MR-7) GN=flgH PE=3 SV=1	272.0	[0..1]	[232..1]
FLGH_PSEAB - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=flgH PE=3 SV=1	272.0	[0..1]	[232..1]
FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12... FLGH_PSEA8 - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain LESB58) GN=flgH PE=3 SV=1 gi\|194545204, gi... - gi\|84322075\|ref\|ZP_00970420.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... gi\|84328545, gi\|... - gi\|84328545\|ref\|ZP_00976549.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa GN=flgH PE=3 SV=1 gi\|107100528 - gi\|107100528\|ref\|ZP_01364446.1\| hypothetical protein PaerPA_01001553 [Pseudomonas aeruginosa PACS2]	271.0	[0..1]	[232..1]
gi\|49082006 - gi\|49082006\|gb\|AAT50403.1\| PA1083 [synthetic construct]	271.0	[0..1]	[232..1]
gi\|57016520, gi\|... - gi\|57242591\|ref\|ZP_00370528.1\| flagellar L-ring protein FlgH [Campylobacter upsaliensis RM3195], gi\|...	271.0	[0..1]	[232..1]
FLGH_CAMJJ - Flagellar L-ring protein OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=f...	270.0	[0..1]	[232..1]
FLGH_PSEA7 - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain PA7) GN=flgH PE=3 SV=1	270.0	[0..1]	[232..1]
gi\|85842933, gi\|... - gi\|86153207\|ref\|ZP_01071411.1\| flagellar L-ring protein FlgH [Campylobacter jejuni subsp. jejuni HB9...	269.0	[0..1]	[232..1]
gi\|78361462, gi\|... - gi\|78366417\|ref\|ZP_00836697.1\| Flagellar L-ring protein [Shewanella sp. PV-4], gi\|78361462\|gb\|EAP032...	269.0	[0..1]	[232..11]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVLFYVLP FAFFGCSATV DPQISMKPPA YVEELAPKQS NNVESAPGSL FGKGDNPLFS  60
   61 DKKAMNVNDL VTVVIQESTT QSTQANKATS RTNTSNLGGG ALTGSSGVVA NALNKVNAYS 120
  121 NIGFQTNSSN NYTGTGSQSR NESFNTTIST RVIKILS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGNYFIEGSR ELLINGEKQI IQLSGVIRPY DIGQDNTIDS KYIADAKILY KTEGEVDRST  60
   61 RKPWGSKVIE AIWPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits