YRC Public Data Repository - Protein Structure Prediction

Protein:	FETP_PHOPR
Organism:	Photobacterium profundum
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FETP_PHOPR.

Description	E-value	Query Range	Subject Range
YQ27_VIBPA, FETP... - (Q87LI5) Hypothetical UPF0269 protein VP2627, Probable Fe(2+)-trafficking protein OS=Vibrio parahaem... FETP_VIBPA - Probable Fe(2+)-trafficking protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) ...	171.0	[0..1]	[90..1]
FETP_ACIET - Probable Fe(2+)-trafficking protein OS=Acidovorax ebreus (strain TPSY) GN=Dtpsy_1924 PE=3 SV=1 FETP_ACISJ - Probable Fe(2+)-trafficking protein OS=Acidovorax sp. (strain JS42) GN=Ajs_1798 PE=3 SV=1	171.0	[0..1]	[89..1]
gi\|91708476, gi\|... - gi\|91774489\|ref\|YP_544245.1\| hypothetical protein Mfla_0133 [Methylobacillus flagellatus KT], gi\|917...	171.0	[0..1]	[89..20]
gi\|84375297, gi\|... - gi\|84394055\|ref\|ZP_00992791.1\| hypothetical protein V12B01_07720 [Vibrio splendidus 12B01], gi\|84375...	171.0	[0..1]	[90..1]
gi\|75855112, gi\|... - gi\|75855112\|ref\|ZP_00762773.1\| COG2924: Fe-S cluster protector protein [Vibrio sp. Ex25], gi\|1161844... gi\|91228698, gi\|... - gi\|91228698\|ref\|ZP_01262612.1\| hypothetical protein V12G01_14084 [Vibrio alginolyticus 12G01], gi\|91...	171.0	[0..1]	[90..1]
FETP_RHOFT - Probable Fe(2+)-trafficking protein OS=Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T...	170.0	[0..1]	[89..1]
gi\|42630406 - gi\|42630406\|ref\|ZP_00155950.1\| COG2924: Fe-S cluster protector protein [Haemophilus influenzae R2846... gi\|46133120 - gi\|46133120\|ref\|ZP_00203081.1\| COG2924: Fe-S cluster protector protein [Haemophilus influenzae R2866... FETP_HAEI8 - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0920 PE=3 SV=... FETP_HAEIN - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... gi\|145267995, gi... - gi\|145634829\|ref\|ZP_01790537.1\| hypothetical protein CGSHiAA_04473 [Haemophilus influenzae PittAA], ... gi\|145632113, gi... - gi\|145632113\|ref\|ZP_01787848.1\| hypothetical protein CGSHi3655_06659 [Haemophilus influenzae 3655], ... gi\|145630504 - gi\|145630504\|ref\|ZP_01786284.1\| hypothetical protein CGSHi22421_04513 [Haemophilus influenzae 22.4-2... gi\|145628355, gi... - gi\|145628355\|ref\|ZP_01784156.1\| hypothetical protein CGSHi22121_04920 [Haemophilus influenzae 22.1-2... FETP_HAEIN, Y760... - (P44048) UPF0269 protein HI0760, Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae GN=HI... gi\|229812342, gi... - gi\|229844628\|ref\|ZP_04464767.1\| hypothetical protein CGSHi6P18H1_03429 [Haemophilus influenzae 6P18H... gi\|229810810, gi... - gi\|229845806\|ref\|ZP_04465918.1\| hypothetical protein CGSHi7P49H1_03128 [Haemophilus influenzae 7P49H... gi\|144983894 - gi\|144983894\|gb\|EDJ91336.1\| hypothetical protein CGSHi22421_04513 [Haemophilus influenzae R3021] FETP_HAEIG - Probable Fe(2+)-trafficking protein OS=Haemophilus influenzae (strain PittGG) GN=CGSHiGG_07295 PE=3 ... gi\|145270210, gi... - gi\|145636684\|ref\|ZP_01792351.1\| hypothetical protein CGSHiHH_03748 [Haemophilus influenzae PittHH], ...	170.0	[0..1]	[89..1]
FETP_VIBVU - Probable Fe(2+)-trafficking protein OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1514 PE=3 SV=1 YF14_VIBVU, FETP... - (Q8DCC5) Hypothetical UPF0269 protein VV11514, Probable Fe(2+)-trafficking protein OS=Vibrio vulnifi... FETP_VIBVY - Probable Fe(2+)-trafficking protein OS=Vibrio vulnificus (strain YJ016) GN=VV2885 PE=3 SV=1	169.0	[0..1]	[90..1]
FETP_VIBFM - Probable Fe(2+)-trafficking protein OS=Vibrio fischeri (strain MJ11) GN=VFMJ11_0420 PE=3 SV=1 FETP_VIBF1 - Probable Fe(2+)-trafficking protein OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=VF_0421 PE=3 ...	169.0	[0..1]	[90..1]
gi\|254846386, gi... - gi\|75829108\|ref\|ZP_00758425.1\| COG2924: Fe-S cluster protector protein [Vibrio cholerae MO10], gi\|25... Y451_VIBCH, FETP... - (Q9KUR4) Hypothetical UPF0269 protein VC0451, Probable Fe(2+)-trafficking protein OS=Vibrio cholerae... gi\|75822031, gi\|... - gi\|75822031\|ref\|ZP_00751745.1\| COG2924: Fe-S cluster protector protein [Vibrio cholerae RC385], gi\|1... FETP_VIBC3 - Probable Fe(2+)-trafficking protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Og... gi\|121590710, gi... - gi\|121590710\|ref\|ZP_01678042.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215474... gi\|121629133, gi... - gi\|75813931\|ref\|ZP_00744613.1\| COG2924: Fe-S cluster protector protein [Vibrio cholerae V52], gi\|121... gi\|124113387, gi... - gi\|153217665\|ref\|ZP_01951346.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113387\|... gi\|75819193, gi\|... - gi\|75819193\|ref\|ZP_00749286.1\| COG2924: Fe-S cluster protector protein [Vibrio cholerae V51], gi\|116... gi\|153224235, gi... - gi\|153224235\|ref\|ZP_01954318.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241177... FETP_VIBCH - Probable Fe(2+)-trafficking protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba... gi\|153802587, gi... - gi\|153802587\|ref\|ZP_01957173.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121850... gi\|153819159, gi... - gi\|153819159\|ref\|ZP_01971826.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|229354000, gi... - gi\|229509075\|ref\|ZP_04398563.1\| hypothetical protein VCE_000478 [Vibrio cholerae B33], gi\|229354000\|... FETP_VIBCM - Probable Fe(2+)-trafficking protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_0436 PE=3... gi\|229507089, gi... - gi\|229507089\|ref\|ZP_04396595.1\| hypothetical protein VCF_002311 [Vibrio cholerae BX 330286], gi\|2293... gi\|229512513, gi... - gi\|229512513\|ref\|ZP_04401984.1\| hypothetical protein VCB_000153 [Vibrio cholerae TMA 21], gi\|2293504... gi\|229519743, gi... - gi\|229519743\|ref\|ZP_04409186.1\| hypothetical protein VCC_003775 [Vibrio cholerae RC9], gi\|229344432\|... gi\|229343125, gi... - gi\|229519837\|ref\|ZP_04409271.1\| hypothetical protein VIF_000351 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229525142, gi... - gi\|229525142\|ref\|ZP_04414547.1\| hypothetical protein VCA_002753 [Vibrio cholerae bv. albensis VL426]... gi\|229530294, gi... - gi\|229530294\|ref\|ZP_04419682.1\| hypothetical protein VCG_003412 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229606255, gi... - gi\|229606255\|ref\|YP_002876903.1\| hypothetical protein VCD_001156 [Vibrio cholerae MJ-1236], gi\|22936... gi\|150422855, gi... - gi\|254291161\|ref\|ZP_04961957.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197751... gi\|153828397, gi... - gi\|153828397\|ref\|ZP_01981064.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887610... gi\|153826561, gi... - gi\|153826561\|ref\|ZP_01979228.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739653...	167.0	[0..1]	[90..1]

Back

Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTVFCTRL KKDAEGLDFQ LYPGDLGKRI FDNISKEAWA EWQSKQTMLI NEKKLNMMNV  60
   61 DHRKLLETEM VNFLFEGQDV IIEGYTPPSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1xs8A
Description:	Solution Structure of YGGX protein of salmonella enterica
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits