YRC Public Data Repository - Protein Structure Prediction

Protein:	DNAT_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNAT_SALPA.

Description	E-value	Query Range	Subject Range
gi\|110808151, gi... - gi\|110808151\|ref\|YP_691671.1\| primosomal protein I [Shigella flexneri 5 str. 8401], gi\|110617699\|gb\|...	2.0E-76	[1..179]	[5..183]
gi\|15834576, gi\|... - gi\|15834576\|ref\|NP_313349.1\| primosomal protein DnaI [Escherichia coli O157:H7 str. Sakai], gi\|13364... gi\|254595759, gi... - gi\|254796359\|ref\|YP_003081196.1\| DNA biosynthesis protein (primosomal protein I) [Escherichia coli O... DNAT_ECO57 - Primosomal protein 1 OS=Escherichia coli O157:H7 GN=dnaT PE=3 SV=3 DNAT_ECO5E - Primosomal protein 1 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dnaT PE=3 SV=1 gi\|209749066, gi... - pir\|\|E86135 DNA biosynthesis, primosomal protein i [imported] - Escherichia coli (strain O157:H7, su... gi\|217326080, gi... - gi\|217326080\|ref\|ZP_03442164.1\| primosomal protein 1 [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|12519385, gi\|... - gi\|15804936\|ref\|NP_290978.1\| primosomal protein I [Escherichia coli O157:H7 EDL933], gi\|12519385\|gb\|... gi\|189379471, gi... - gi\|189379471\|gb\|EDU97887.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC508], gi\|168797934... gi\|195937635 - gi\|195937635\|ref\|ZP_03083017.1\| primosomal protein I [Escherichia coli O157:H7 str. EC4024] gi\|208735028, gi... - gi\|208813751\|ref\|ZP_03255080.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208738663, gi... - gi\|208818540\|ref\|ZP_03258860.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|168766643, gi... - gi\|189364127\|gb\|EDU82546.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4486], gi\|16876664... gi\|168776660, gi... - gi\|187767996\|gb\|EDU31840.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4196], gi\|16877666... gi\|189000697, gi... - gi\|189000697\|gb\|EDU69683.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4076], gi\|16878165... gi\|189374838, gi... - gi\|189374838\|gb\|EDU93254.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC869], gi\|168785005... gi\|168752756, gi... - gi\|188013536\|gb\|EDU51658.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4113], gi\|16875275... gi\|189357796, gi... - gi\|189357796\|gb\|EDU76215.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4401], gi\|16875493... gi\|189365031, gi... - gi\|189365031\|gb\|EDU83447.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4501], gi\|16876509...	2.0E-76	[1..179]	[1..179]
DNAT_ECOL6 - Primosomal protein 1 OS=Escherichia coli O6 GN=dnaT PE=3 SV=3 DNAT_ECO81 - Primosomal protein 1 OS=Escherichia coli O81 (strain ED1a) GN=dnaT PE=3 SV=1 DNAT_ECOL6 - Primosomal protein 1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaT PE=3 SV=... gi\|227885152, gi... - gi\|227885152\|ref\|ZP_04002957.1\| primosomal protein I [Escherichia coli 83972], gi\|227837981\|gb\|EEJ48...	2.0E-76	[1..179]	[1..179]
gi\|30065603, gi\|... - gi\|30065603\|ref\|NP_839774.1\| primosomal protein I [Shigella flexneri 2a str. 2457T], gi\|30043867\|gb\|... EG10244 - DNA biosynthesis protein (primosomal protein I) / Primasomal protein i gi\|226902012, gi... - gi\|237704100\|ref\|ZP_04534581.1\| primosomal protein I [Escherichia sp. 3_2_53FAA], gi\|226902012\|gb\|EE... DNAT_ECOBW - Primosomal protein 1 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=dnaT PE=3 SV=1 gi\|242379886, gi... - gi\|251787613\|ref\|YP_003001917.1\| hypothetical protein B21_04205 [Escherichia coli BL21], gi\|24237988... gi\|253775007, gi... - gi\|254291040\|ref\|YP_003056790.1\| primosomal protein I [Escherichia coli BL21(DE3)], gi\|253980349\|gb\|... gi\|226840480, gi... - gi\|254037374\|ref\|ZP_04871451.1\| primosomal protein 1 [Escherichia sp. 1_1_43], gi\|226840480\|gb\|EEH72... gi\|254164289, gi... - gi\|254164289\|ref\|YP_003047399.1\| primosomal protein I [Escherichia coli B str. REL606], gi\|253976192... gi\|89111071, gi\|... - gi\|89111071\|ref\|AP_004851.1\| DNA biosynthesis protein [Escherichia coli str. K-12 substr. W3110], gi... gi\|56384152, gi\|... - gi\|56480601\|ref\|NP_710101.2\| primosomal protein I [Shigella flexneri 2a str. 301], gi\|56384152\|gb\|AA... DNAT_SHIFL - Primosomal protein 1 OS=Shigella flexneri GN=dnaT PE=3 SV=2 DNAT_ECOLI - Primosomal protein 1 (Primosomal protein I) - Escherichia coli gi\|75212086, gi\|... - gi\|75212086\|ref\|ZP_00712126.1\| hypothetical protein EcolB_01000687 [Escherichia coli B171], gi\|19442... gi\|193070111, gi... - gi\|75235065\|ref\|ZP_00719321.1\| hypothetical protein EcolE1_01003071 [Escherichia coli E110019], gi\|1... DNAT_SHIB3 - Primosomal protein 1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dnaT PE=3 SV=1 DNAT_ECO24 - Primosomal protein 1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaT PE=3 SV=1 EG10244 - DNA biosynthesis protein (primosomal protein I) / Primasomal protein i DNAT_SHISS - Primosomal protein 1 OS=Shigella sonnei (strain Ss046) GN=dnaT PE=3 SV=1 DNAT_SHIBS - Primosomal protein 1 OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaT PE=3 SV=1 gi\|193066715, gi... - gi\|75255093\|ref\|ZP_00726989.1\| hypothetical protein EcolE2_01004765 [Escherichia coli E22], gi\|19306... gi\|75515554, gi\|... - gi\|75515554\|ref\|ZP_00737711.1\| hypothetical protein Ecol5_01000658 [Escherichia coli 53638], gi\|1884... gi\|194437807, gi... - gi\|83586621\|ref\|ZP_00925253.1\| hypothetical protein Ecol1_01002028 [Escherichia coli 101-1], gi\|1944... DNAT_ECOSM - Primosomal protein 1 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaT PE=3 SV=1 DNAT_ECODH - Primosomal protein 1 OS=Escherichia coli (strain K12 / DH10B) GN=dnaT PE=3 SV=1 DNAT_ECO45 - Primosomal protein 1 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dnaT PE=3 SV=1 gi\|194416912, gi... - gi\|194434849\|ref\|ZP_03067097.1\| primosomal protein 1 [Shigella dysenteriae 1012], gi\|194416912\|gb\|ED... DNAT_ECO55 - Primosomal protein 1 OS=Escherichia coli (strain 55989 / EAEC) GN=dnaT PE=3 SV=1	3.0E-76	[1..179]	[1..179]
DNAT_ECOSE - Primosomal protein 1 OS=Escherichia coli (strain SE11) GN=dnaT PE=3 SV=1 DNAT_ECO8A - Primosomal protein 1 OS=Escherichia coli O8 (strain IAI1) GN=dnaT PE=3 SV=1 DNAT_ECOHS - Primosomal protein 1 OS=Escherichia coli O9:H4 (strain HS) GN=dnaT PE=3 SV=1	8.0E-76	[1..179]	[1..179]
gi\|190901010, gi... - gi\|75227796\|ref\|ZP_00714519.1\| hypothetical protein EcolB7_01003840 [Escherichia coli B7A], gi\|19116...	9.0E-76	[1..179]	[1..179]
DNAT_ECOL5 - Primosomal protein 1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaT PE=3 SV=1 gi\|190908996, gi... - gi\|75242209\|ref\|ZP_00725971.1\| hypothetical protein EcolF_01000663 [Escherichia coli F11], gi\|191170... DNAT_ECO7I - Primosomal protein 1 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dnaT PE=3 SV=1	1.0E-75	[1..179]	[1..179]
DNAT_SHIDS - Primosomal protein 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaT PE=3 SV=1	2.0E-75	[1..179]	[1..179]
gi\|33090023 - gi\|33090023\|gb\|AAP93879.1\| primosomal protein I [Escherichia coli]	2.0E-75	[1..179]	[1..179]
DNAT_ECOUT - Primosomal protein 1 OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaT PE=3 SV=1 DNAT_ECOK1 - Primosomal protein 1 OS=Escherichia coli O1:K1 / APEC GN=dnaT PE=3 SV=1	4.0E-75	[1..179]	[1..179]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRILTSDV IGIDVLLHDH HAVLAKSTGG AVAVFANNAP AFYAVTPARM AELLALEEKL  60
   61 SRPGSDVALD AQFYEEPEAA PVAIPC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.25
Match:	2a6qA
Description:	Crystal structure of YefM-YoeB complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [87-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKFAMYPAWQ PDADFQRQAA LWGVALREPV TAEELAAFIA YWQAEGKVFH HIQWQQKLAR  60
   61 SVQISRSSNG GMPQRDINSV SEPDNHIPPG FRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits