YRC Public Data Repository - Protein Structure Prediction

Protein:	DGOA_ECOLI
Organism:	Escherichia coli
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGOA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56380333, gi\|... - gi\|56420491\|ref\|YP_147809.1\| 2-dehydro-3-deoxyphosphogluconate aldolase [Geobacillus kaustophilus HT...	164.0	[0..1]	[205..7]
gi\|238913081 - gi\|238913081\|ref\|ZP_04656918.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica... gi\|62129949, gi\|... - gi\|62182316\|ref\|YP_218733.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica su... gi\|168464842, gi... - gi\|195632463\|gb\|EDX50947.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub... gi\|167992421, gi... - gi\|205329421\|gb\|EDZ16185.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Salmonella enterica sub...	161.0	[0..1]	[205..1]
gi\|50123335, gi\|... - gi\|50123335\|ref\|YP_052502.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Pectobacterium atrosep...	161.0	[0..1]	[205..1]
gi\|40063562 - gi\|40063562\|gb\|AAR38351.1\| KDPG and KHG aldolase family/SMP-30 family protein [uncultured marine bac...	159.0	[0..9]	[201..5]
gi\|75237636, gi\|... - gi\|75237636\|ref\|ZP_00721656.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|91213377, gi\|... - gi\|91213377\|ref\|YP_543363.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli UTI89... gi\|218692123, gi... - gi\|218692123\|ref\|YP_002400335.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli E... gi\|226903035, gi... - gi\|237702864\|ref\|ZP_04533345.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia sp. 3_2...	159.0	[0..3]	[200..6]
gi\|227888557, gi... - gi\|227888557\|ref\|ZP_04006362.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 83... gi\|26111027, gi\|... - gi\|26250596\|ref\|NP_756636.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli CFT07...	159.0	[0..3]	[200..6]
gi\|194438600, gi... - gi\|83585910\|ref\|ZP_00924549.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Escherichia coli... gi\|253326574, gi... - gi\|254290538\|ref\|YP_003056286.1\| hypothetical protein ECD_03722 [Escherichia coli BL21(DE3)], gi\|253... gi\|251787101, gi... - gi\|251787101\|ref\|YP_003001405.1\| hypothetical protein B21_03671 [Escherichia coli BL21], gi\|24237937... gi\|253975689, gi... - gi\|254163788\|ref\|YP_003046896.1\| putative conserved hypothetical protein [Escherichia coli B str. RE...	158.0	[0..3]	[200..6]
gi\|113461739, gi... - gi\|23467619\|ref\|ZP_00123199.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	157.0	[0..1]	[205..9]
gi\|110644175, gi... - gi\|110644175\|ref\|YP_671905.1\| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Escherichia coli 536]...	156.0	[0..3]	[200..6]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWQTKLPLI AILRGITPDE ALAHVGAVID AGFDAVEIPL NSPQWEQSIP AIVDAYGDKA  60
   61 LIGAGTVLKP EQVDALARMG CQLIVTPNIH SEVIRRAVGY GMTVCPGCAT ATEAFTALEA 120
  121 GAQALKIFPS SAFGPQYIKA LKAVLPSDIA VFAVGGVTPE NLAQWIDAGC AGAGLGSDLY 180
  181 RAGQSVERTA QQAAAFVKAY REAVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2v81A
Description:	No description for 2v81A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits