YRC Public Data Repository - Protein Structure Prediction

Protein:	DAD4_CANGA
Organism:	Candida glabrata
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAD4_CANGA.

Description	E-value	Query Range	Subject Range
gi\|45201451, gi\|... - gi\|45201451\|ref\|NP_987021.1\| AGR355Cp [Ashbya gossypii ATCC 10895], gi\|44986385\|gb\|AAS54845.1\| AGR35... gi\|44986385 - gi\|44986385\|gb\|AAS54845.1\| AGR355Cp [Ashbya gossypii ATCC 10895]	103.0	[0..2]	[73..8]
DAD4_YEAST - DASH complex subunit DAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAD4 PE=1 SV=1 Sbay_484.6, Sbay... - probable YDR320C-A HSK2 (6422-6640), null DAD4 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced... gi\|190404739 - gi\|190404739\|gb\|EDV08006.1\| DASH complex subunit DAD4 [Saccharomyces cerevisiae RM11-1a] ORFP:4920 - YDR320C-A, Contig c106 7411-7629 reverse complement gi\|151942296 - gi\|151942296\|gb\|EDN60652.1\| duo1 and dam1 interacting protein [Saccharomyces cerevisiae YJM789]	97.0	[0..2]	[73..1]
DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis GN=DAD4 PE=3 SV=1 DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	95.0	[0..2]	[73..1]
DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica GN=DAD4 PE=3 SV=1 DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DAD4 PE=3 SV=1	94.0	[0..2]	[73..1]
gi\|46124023, gi\|... - gi\|46124023\|ref\|XP_386565.1\| hypothetical protein FG06389.1 [Gibberella zeae PH-1], gi\|42551750\|gb\|E...	92.0	[0..2]	[72..1]
DAD4_SCHPO - DASH complex subunit dad4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dad4 PE=1 SV=2 dad4 - DASH complex subunit Dad4	91.0	[0..2]	[73..1]
gi\|71003708, gi\|... - gi\|71003708\|ref\|XP_756520.1\| hypothetical protein UM00373.1 [Ustilago maydis 521], ref\|XP_397988.1\| ...	71.0	[0..2]	[63..1]
gi\|111069191 - gi\|111069191\|gb\|EAT90311.1\| hypothetical protein SNOG_02099 [Phaeosphaeria nodorum SN15]	68.0	[0..22]	[72..10]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENPYEEVQ VNVLSRIIAN VEKLNQSVRT LNQELENVNK RNKNLEVMGQ ICENYHRSVQ  60
   61 FNLEATGNKK PPL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.568636
Match:	PF08650.1
Description:	No description for PF08650.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.809	0.020	microtubule	a.47.2	t-snare proteins
View	Download	0.861	0.004	microtubule	a.46.1	Methionine synthase domain
View	Download	0.774	0.003	microtubule	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.822	N/A	N/A	d.58.39	Glutamyl tRNA-reductase catalytic, N-terminal domain
View	Download	0.773	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits