YRC Public Data Repository - Protein Structure Prediction

Protein:	CRCB1_GEOKA
Organism:	Geobacillus kaustophilus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRCB1_GEOKA.

Description	E-value	Query Range	Subject Range
gi\|30692518, gi\|... - gi\|30692518\|gb\|AAP33390.1\| CrcB [Bacillus thuringiensis serovar aizawai], gi\|221665115\|gb\|ACM24761.1...	106.0	[0..2]	[116..174]
gi\|67545817, gi\|... - gi\|67545817\|ref\|ZP_00423736.1\| Camphor resistance CrcB protein [Burkholderia vietnamiensis G4], gi\|6...	105.0	[0..3]	[115..101]
CRCB3_STRAW, CRB... - Protein CrcB homolog 3 OS=Streptomyces avermitilis GN=crcB3 PE=3 SV=1, (Q82LR8) Protein crcB homolog... CRCB3_STRAW - Putative fluoride ion transporter CrcB 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 ...	102.0	[0..4]	[116..63]
gi\|89321322, gi\|... - gi\|89337738\|ref\|ZP_01190516.1\| Camphor resistance CrcB protein [Mycobacterium flavescens PYR-GCK], g...	102.0	[0..2]	[116..6]
gi\|89092931, gi\|... - gi\|89092931\|ref\|ZP_01165883.1\| crcB protein domain protein [Oceanospirillum sp. MED92], gi\|89082956\|...	102.0	[0..1]	[116..1]
gi\|88941515, gi\|... - gi\|88941515\|ref\|ZP_01146929.1\| crcB protein [Acidiphilium cryptum JF-5], gi\|88919772\|gb\|EAR38909.1\| ...	101.0	[0..1]	[116..70]
gi\|218900224, gi... - gi\|218900224\|ref\|YP_002448635.1\| crcB protein [Bacillus cereus G9842], gi\|218540671\|gb\|ACK93065.1\| c... gi\|75760557, gi\|... - gi\|75760557\|ref\|ZP_00740591.1\| CrcB family protein [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228791497, gi... - gi\|228968194\|ref\|ZP_04129194.1\| Protein crcB 1 [Bacillus thuringiensis serovar sotto str. T04001], g... gi\|228903577, gi... - gi\|228903577\|ref\|ZP_04067698.1\| Protein crcB 1 [Bacillus thuringiensis IBL 4222], gi\|228856006\|gb\|EE...	100.0	[0..4]	[115..13]
gi\|86750065, gi\|... - gi\|86750065\|ref\|YP_486561.1\| hypothetical protein RPB_2948 [Rhodopseudomonas palustris HaA2], gi\|865...	99.0	[0..6]	[115..22]
gi\|158313280, gi... - gi\|68232006\|ref\|ZP_00571163.1\| Camphor resistance CrcB protein [Frankia sp. EAN1pec], gi\|68200366\|gb...	99.0	[0..4]	[115..56]
gi\|166852950, gi... - gi\|167038710\|ref\|YP_001661695.1\| CrcB protein [Thermoanaerobacter sp. X514], gi\|166852950\|gb\|ABY9135... gi\|241883051, gi... - gi\|241904583\|ref\|ZP_04789268.1\| CrcB protein [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|24... gi\|242258471, gi... - gi\|242258471\|ref\|ZP_04803270.1\| CrcB protein [Thermoanaerobacter sp. X513], gi\|242230005\|gb\|EES32417... gi\|167038577, gi... - gi\|76795537\|ref\|ZP_00777910.1\| Camphor resistance CrcB protein [Thermoanaerobacter ethanolicus ATCC ...	99.0	[0..2]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAPLFVAIG GFFGAMARYL VSRWAARRSP RFPLGTLIVN LLGSFLLGWL AGSGAADAAK  60
   61 LLVGTGFMGA FTTFSTLKWE SVQMMQQRQW AKVVVYLAAT YLCGVWLAWL GYHVGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.055517
Match:	PF02537.6
Description:	No description for PF02537.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.959	N/A	N/A	a.63.1	Apolipophorin-III

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits