YRC Public Data Repository - Protein Structure Prediction

Protein:	COAD_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAD_CAMJR.

Description	E-value	Query Range	Subject Range
COAD_PHODP - Phosphopantetheine adenylyltransferase OS=Photobacterium damsela subsp. piscicida GN=coaD PE=3 SV=1	178.0	[0..2]	[155..4]
COAD_CARHZ - Phosphopantetheine adenylyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / D...	174.0	[0..2]	[155..3]
gi\|71556883, gi\|... - gi\|71736330\|ref\|YP_276889.1\| phosphopantetheine adenylyltransferase [Pseudomonas syringae pv. phaseo...	174.0	[0..2]	[155..31]
tr\|F3GGS5\|F3GGS5... - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. pisi str. 1704B GN=coaD PE=3 SV=1 COAD_PSEU2 - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=coaD P...	174.0	[0..2]	[155..3]
COAD_MARHV - Phosphopantetheine adenylyltransferase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / D...	173.0	[0..2]	[155..3]
COAD_VIBF1 - Phosphopantetheine adenylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=coaD PE=3 ...	173.0	[0..4]	[155..6]
COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR... COAD_PSEAB - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=coaD PE=3 SV... gi\|94414802 - gi\|94414802\|ref\|ZP_01294656.1\| hypothetical protein PaerP_01003382 [Pseudomonas aeruginosa PA7] gi\|84318612, gi\|... - gi\|84318612\|ref\|ZP_00967034.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... gi\|126196839, gi... - gi\|84324448\|ref\|ZP_00972506.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa GN=coaD PE=3 SV=1 gi\|107099347 - gi\|107099347\|ref\|ZP_01363265.1\| hypothetical protein PaerPA_01000359 [Pseudomonas aeruginosa PACS2] COAD_PSEA8 - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=coaD PE=3 SV=1	173.0	[0..2]	[155..3]
tr\|E4RAP8\|E4RAP8... - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=coaD PE=3 SV=1 COAD_PSEPK - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=coaD PE=3 SV=1	173.0	[0..2]	[155..3]
gi\|95108558 - gi\|95108558\|emb\|CAK13252.1\| phosphopantetheine adenylyltransferase [Pseudomonas entomophila L48] COAD_PSEE4 - Phosphopantetheine adenylyltransferase OS=Pseudomonas entomophila (strain L48) GN=coaD PE=3 SV=1	173.0	[0..2]	[155..3]
COAD_SHESR - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=coaD PE=3 SV=1 COAD_SHESM - Phosphopantetheine adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=coaD PE=3 SV=1	173.0	[0..2]	[155..4]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCLYPGTFD PITNGHLDVI KRALKIFDEV IVAIAKSEHK KPCYDLEKRK ELALLATQNL  60
   61 KNVKIIAFDN LLVDLAKELK VNTIIRGLRA VSDFEYELQI GYANHALWED METIYLMPSL 120
  121 KHAFISSSIV RSIVAHGGDV SSLVPKEILP FLKDQSCM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1od6A
Description:	Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pantetheine-phosphate adenylyltransferase activity	3.03187936898064	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	2.81193878035427	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	1.62370757945153	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	1.62370757945153	bayes_pls_golite062009
adenylyltransferase activity	1.61625530385033	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	1.61089358601097	bayes_pls_golite062009
ligase activity	1.15322915814026	bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity	0.46461802137308	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	0.21096109874233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: