YRC Public Data Repository - Protein Structure Prediction

Protein:	APC16_BOVIN
Organism:	Bos taurus
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC16_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|50749324 - gi\|50749324\|ref\|XP_421587.1\| PREDICTED: similar to hypothetical protein D10Ertd641e [Gallus gallus]	198.0	[0..20]	[110..44]
APC16_PONAB - Anaphase-promoting complex subunit 16 OS=Pongo abelii GN=ANAPC16 PE=3 SV=1 tr\|M3WD53\|M3WD53... - Anaphase promoting complex subunit 16 OS=Felis catus GN=ANAPC16 PE=4 SV=1 gi\|109089379, gi... - gi\|109089385\|ref\|XP_001106406.1\| PREDICTED: hypothetical protein isoform 6 [Macaca mulatta], gi\|1090... gi\|73952866, gi\|... - gi\|73952866\|ref\|XP_861796.1\| PREDICTED: hypothetical protein XP_856703 isoform 3 [Canis familiaris],... ANAPC16 - anaphase promoting complex subunit 16 CJ104_PONPY - UPF0448 protein C10orf104 homolog - Pongo pygmaeus (Orangutan) ENSPTRT00000004910 - null ENSOCUP000000144... - pep:novel chromosome:oryCun2:18:15179968:15186780:-1 gene:ENSOCUG00000016767 transcript:ENSOCUT00000... APC16_MOUSE - Anaphase-promoting complex subunit 16 OS=Mus musculus GN=Anapc16 PE=3 SV=1 tr\|G3I1Z2\|G3I1Z2... - UPF0448 protein C10orf104-like OS=Cricetulus griseus GN=I79_017412 PE=4 SV=1 ENSCJAT00000014304 - null gi\|194205991 - gi\|194205991\|ref\|XP_001502903.2\| PREDICTED: hypothetical protein [Equus caballus]	193.0	[0..20]	[110..20]
gi\|47217674 - gi\|47217674\|emb\|CAG13305.1\| unnamed protein product [Tetraodon nigroviridis] gi\|225704354, gi... - gi\|238231791\|ref\|NP_001154082.1\| CJ104 protein [Oncorhynchus mykiss], gi\|225705562\|gb\|ACO08627.1\| C1... gi\|225706190, gi... - gi\|225707796\|gb\|ACO09744.1\| C10orf104 homolog [Osmerus mordax], gi\|225706190\|gb\|ACO08941.1\| C10orf10... gi\|225711154 - gi\|225711154\|gb\|ACO11423.1\| UPF0448 protein C10orf104 homolog [Caligus rogercresseyi]	185.0	[0..20]	[108..20]
APC16_XENLA - Anaphase-promoting complex subunit 16 OS=Xenopus laevis GN=anapc16 PE=3 SV=1	181.0	[0..20]	[110..20]
gi\|62531042, gi\|... - gi\|66348081\|ref\|NP_001017878.1\| hypothetical protein LOC550576 [Danio rerio], gi\|62531042\|gb\|AAH9297...	181.0	[0..20]	[108..20]
APC16_XENTR - Anaphase-promoting complex subunit 16 OS=Xenopus tropicalis GN=anapc16 PE=3 SV=1	179.0	[0..20]	[110..20]
gi\|114631152 - gi\|114631152\|ref\|XP_001136981.1\| PREDICTED: hypothetical protein [Pan troglodytes]	139.0	[0..48]	[110..125]
tr\|A0A087WUN5\|A0... - Anaphase-promoting complex subunit 16 OS=Homo sapiens GN=ANAPC16 PE=4 SV=1 gi\|73952862 - gi\|73952862\|ref\|XP_861737.1\| PREDICTED: hypothetical protein XP_856644 isoform 2 [Canis familiaris]	131.0	[0..20]	[110..20]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSSSSSA GGVSGSSVAG SGFSVSDLAP PRKALFTYPK GAGEMLEDGS ERFLCESVFS  60
   61 YQVASTLKQV KHDQQVARME KLAGLVEELE ADEWRFKPIE QLLGFTPSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits