YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL4_CHICK
Organism:	Gallus gallus
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL4_CHICK.

Description	E-value	Query Range	Subject Range
SY04_CHICK - (Q90826) Small inducible cytokine A4 homolog precursor (Macrophage inflammatory protein 1-beta homol...	123.0	[0..1]	[90..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	120.0	[0..1]	[90..1]
gi\|55508895 - gi\|55508895\|gb\|AAV52797.1\| MIP-beta-like CC chemokine [Anas platyrhynchos]	118.0	[0..1]	[90..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	117.0	[0..1]	[90..1]
CCL4_RAT - C-C motif chemokine 4 OS=Rattus norvegicus GN=Ccl4 PE=3 SV=1	116.0	[0..1]	[90..1]
gi\|114671857 - gi\|114671857\|ref\|XP_001172226.1\| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor ...	115.0	[0..2]	[90..42]
CCL3L1, CCL3L3 - chemokine (C-C motif) ligand 3-like 3, chemokine (C-C motif) ligand 3-like 1	115.0	[0..1]	[90..1]
CCL4_BOVIN - C-C motif chemokine 4 OS=Bos taurus GN=CCL4 PE=3 SV=1	114.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSVAALAV LLIAICYQTS AAPVGSDPPT SCCFTYISRQ LPFSFVADYY ETNSQCPHAG  60
   61 VVFITRKGRE VCANPENDWV QDYMNKLELN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1humA
Description:	Macrophage inflammatory protein, MIP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits