YRC Public Data Repository - Protein Structure Prediction

Protein:	CAPP2_ARATH
Organism:	Arabidopsis thaliana
Length:	963 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAPP2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|37785629 - gi\|37785629\|gb\|AAP43628.1\| phosphoenolpyruvate carboxylase [Arabidopsis thaliana]	1339.0	[0..1]	[963..1]
gi\|7436543, gi\|2... - pir\|\|T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton, gi\|2266947\|gb\|AAB80714....	1301.0	[0..1]	[963..1]
gi\|45505269 - gi\|45505269\|gb\|AAS67006.1\| Phosphoenolpyruvate carboxylase [Glycine max]	1296.0	[0..1]	[963..1]
CAPPC_FLATR - Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1	1293.0	[0..1]	[963..1]
gi\|20162467 - gi\|20162467\|gb\|AAM14597.1\|AF494192_1 phosphoenolpyruvate carboxylase FPUB966 [Flaveria pubescens]	1292.0	[0..1]	[963..1]
gi\|763097, gi\|10... - gi\|763097\|emb\|CAA88829.1\| phosphoenolpyruvate carboxylase [Flaveria pringlei], pir\|\|S52853 phosphoen...	1292.0	[0..1]	[963..1]
gi\|20162465 - gi\|20162465\|gb\|AAM14596.1\|AF494191_1 phosphoenolpyruvate carboxylase FB966 [Flaveria brownii]	1292.0	[0..1]	[963..1]
gi\|92874670 - gi\|92874670\|gb\|ABE82904.1\| Phosphoenolpyruvate carboxylase [Medicago truncatula]	1290.0	[0..1]	[963..1]
CAPP_PICAB - Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1	1290.0	[0..1]	[963..1]

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Predicted Domain #1

Region A:
Residues: [1-963]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARNLEKMA SIDAQLRLLA PGKVSEDDKL IEYDALLLDR FLDILQDLHG EDVREFVQEC  60
   61 YEVAADYDGN RNTEKLEELG NMLTSLDPGD SIVVTKSFSN MLSLANLAEE VQIAYRRRIK 120
  121 KLKKGDFADE ASATTESDIE ETLKRLLQLN KTPEEVFDAL KNQTVDLVLT AHPTQSVRRS 180
  181 LLQKFGRIRD CLTQLYAKDI TPDDKQELDE ALQREIQAAF RTDEIRRTPP TPQDEMRAGM 240
  241 SYFHETIWKG VPKFLRRVDT ALKNIGINER VPYNAPLIQF SSWMGGDRDG NPRVTPEVTR 300
  301 DVCLLARMMA ANLYFSQIED LMFEMSMWRC NEELRVRAER QRCAKRDAKH YIEFWKQIPA 360
  361 NEPYRAILGD VRDKLYNTRE RARQLLSSGV SDVPEDAVFT SVDQFLEPLE LCYRSLCDCG 420
  421 DRPIADGSLL DFLRQVSTFG LALVKLDIRQ ESERHSDVLD AITTHLGIGS YKEWSEDKRQ 480
  481 EWLLSELSGK RPLFGPDLPK TEEVADVLDT FKVISELPSD SFGAYIISMA TAPSDVLAVE 540
  541 LLQRECGITD PLRVVPLFEK LADLESAPAA VARLFSIEWY RNRINGKQEV MIGYSDSGKD 600
  601 AGRLSAAWQL YKTQEELVKV AKEYGVKLTM FHGRGGTVGR GGGPTHLAIL SQPPDTIHGQ 660
  661 LRVTVQGEVI EQSFGEEHLC FRTLQRFTAA TLEHGMHPPV SPKPEWRVLM DEMAIIATEE 720
  721 YRSVVFKEPR FVEYFRLATP ELEYGRMNIG SRPSKRKPSG GIESLRAIPW IFAWTQTRFH 780
  781 LPVWLGFGGA FKRVIQKDSK NLNMLKEMYN QWPFFRVTID LVEMVFAKGD PGIAALYDRL 840
  841 LVSEELQPFG EQLRVNYQET RRLLLQVAGH KDILEGDPYL RQRLQLRDPY ITTLNVCQAY 900
  901 TLKQIRDPSF HVKVRPHLSK DYMESSPAAE LVKLNPKSEY APGLEDTVIL TMKGIAAGMQ 960
  961 NTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1jqoA
Description:	Phosphoenolpyruvate carboxylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits