YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_STAEQ
Organism:	Staphylococcus epidermidis RP62A
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_STAEQ.

Description	E-value	Query Range	Subject Range
ACPS_STAS1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain AT...	142.0	[0..1]	[114..1]
ACPS_STAHJ - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=acpS PE=3 S...	140.0	[0..1]	[117..1]
gi\|221086403, gi... - gi\|221086403\|ref\|ZP_03555945.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC61], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus (strain HTA426) GN=acpS PE=3 SV=1 gi\|229499573, gi... - gi\|229499573\|ref\|ZP_04393256.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC52], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus GN=acpS PE=3 SV=1	139.0	[0..1]	[115..1]
ACPS_STAAU - (Q9ZAH6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... gi\|221141593 - gi\|221141593\|ref\|ZP_03566086.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... gi\|221137313 - gi\|221137313\|ref\|ZP_03562122.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAC - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain COL) GN=acpS PE=1 SV=1 ACPS_STAAT - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=acpS PE=3... gi\|87126430\|gb\|A... - holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. aureus USA300], holo-(acyl-carrie... gi\|253731092, gi... - gi\|253731092\|ref\|ZP_04865257.1\| holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. a... ACPS_STAAE - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Newman) GN=acpS PE=3 SV=1 ACPS_STAA3 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300) GN=acpS PE=3 SV=1 ACPS_STAA8 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=acpS PE=3 SV=1	139.0	[0..1]	[116..1]
gi\|269203706\|ref... - 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aureus ED98] ACPS_STAAW - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MW2) GN=acpS PE=3 SV=1 ACPS_STAAN - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain N315) GN=acpS PE=3 SV=1 ACPS_STAAM - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acpS PE... gi\|227558846, gi... - gi\|227558846\|ref\|ZP_03988893.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus MN8], gi\|2272... ACPS_STAAS - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MSSA476) GN=acpS PE=3 SV=1 gi\|227899590, gi... - gi\|227899590\|ref\|ZP_04017395.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH60], gi\|22... gi\|251812358, gi... - gi\|251812358\|ref\|ZP_04826831.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH70], gi\|25... gi\|25304180 - pir\|\|E89999 holo-ACP synthase [imported] - Staphylococcus aureus (strain N315) ACPS_STAAB - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=acpS ... gi\|253315701 - gi\|253315701\|ref\|ZP_04838914.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAR - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MRSA252) GN=acpS PE=3 SV=1 gi\|253728928, gi... - gi\|253733095\|ref\|ZP_04867260.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH130], gi\|2... ACPS_STAA2 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH1) GN=acpS PE=3 SV=1 gi\|255006860 - gi\|255006860\|ref\|ZP_05145461.2\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAA9 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH9) GN=acpS PE=3 SV=1 ACPS_STAA1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=acpS PE=...	138.0	[0..1]	[116..1]
ACPS_EXIS2 - Holo-[acyl-carrier-protein] synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 25...	136.0	[0..1]	[116..1]
gi\|9798536 - gi\|9798536\|emb\|CAC03496.1\| hypothetical protein [Lactobacillus reuteri]	136.0	[0..1]	[114..21]
ACPS_GEODF - Holo-[acyl-carrier-protein] synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) G...	135.0	[0..1]	[115..1]
gi\|86166287, gi\|... - gi\|87118653\|ref\|ZP_01074552.1\| holo-(acyl-carrier protein) synthase [Marinomonas sp. MED121], gi\|861...	134.0	[0..1]	[117..15]

Back

Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYGIGIDLI EIERIKNLQN QTKFIERILT IEERDKLNQY THEQRRLEFL AGRFTVKEAF  60
   61 SKALGTGLGK SVSFQDINCY NDALGKPCID YPGFYTHVSI THTENYAMSQ VILEKNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: