YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_LACJO
Organism:	Lactobacillus johnsonii
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_LACJO.

Description	E-value	Query Range	Subject Range
gi\|221086403, gi... - gi\|221086403\|ref\|ZP_03555945.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC61], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus (strain HTA426) GN=acpS PE=3 SV=1 gi\|229499573, gi... - gi\|229499573\|ref\|ZP_04393256.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC52], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus GN=acpS PE=3 SV=1	146.0	[0..1]	[118..1]
ACPS_STRTD - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=...	143.0	[0..1]	[118..1]
ACPS_STRT1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=acpS PE=3 S... ACPS_STRT2 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)... gi\|55737684, gi\|... - gb\|AAV63246.1\| holo-(acyl carrier protein) synthase [Streptococcus thermophilus CNRZ1066], gb\|AAV61...	141.0	[0..1]	[117..1]
gi\|9798536 - gi\|9798536\|emb\|CAC03496.1\| hypothetical protein [Lactobacillus reuteri]	139.0	[0..1]	[116..21]
gi\|221321806 - gi\|221321806\|ref\|ZP_03603100.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili... ACPS_BACSU - Holo-[acyl-carrier-protein] synthase OS=Bacillus subtilis (strain 168) GN=acpS PE=1 SV=1 ACPS_BACSU - Holo-[acyl-carrier-protein] synthase OS=Bacillus subtilis GN=acpS PE=1 SV=1 gi\|221317530 - gi\|221317530\|ref\|ZP_03598824.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili... gi\|221312607 - gi\|221312607\|ref\|ZP_03594412.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili...	138.0	[0..1]	[119..1]
ACPS_EXIS2 - Holo-[acyl-carrier-protein] synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 25...	137.0	[0..1]	[119..1]
gi\|147923430, gi... - gi\|148984141\|ref\|ZP_01817436.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP3-BS7... ACPS_STRZP - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain P1031) GN=acpS PE=3 SV=1 ACPS_STRP7 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain 70585) GN=acpS PE=3 SV=1 ACPS_STRZT - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=acpS PE=3 ... gi\|237649237 - gi\|237649237\|ref\|ZP_04523489.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae CCRI 19... ACPS_STRP2 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)... gi\|237821997 - gi\|237821997\|ref\|ZP_04597842.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae CCRI 19... ACPS_STRPN - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae GN=acpS PE=1 SV=1 gi\|149011436, gi... - gi\|149011436\|ref\|ZP_01832683.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP19-BS... gi\|147761936, gi... - gi\|149006638\|ref\|ZP_01830337.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP18-BS... gi\|147759800, gi... - gi\|149001991\|ref\|ZP_01826945.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP14-BS... gi\|147756251, gi... - gi\|148997752\|ref\|ZP_01825316.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP11-BS... gi\|148994016, gi... - gi\|148994016\|ref\|ZP_01823372.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP9-BS6... gi\|147925100, gi... - gi\|148989350\|ref\|ZP_01820718.1\| 4'-phosphopantetheinyl transferase [Streptococcus pneumoniae SP6-BS7... ACPS_STRPN - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / T... gi\|168488584, gi... - gi\|183572725\|gb\|EDT93253.1\| holo-(acyl-carrier-protein) synthase [Streptococcus pneumoniae SP195], g... ACPS_STRR6 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=acpS ... gi\|168484890, gi... - gi\|172041955\|gb\|EDT50001.1\| holo-(acyl-carrier-protein) synthase [Streptococcus pneumoniae CDC1873-0... gi\|168493603, gi... - gi\|183576263\|gb\|EDT96791.1\| holo-(acyl-carrier-protein) synthase [Streptococcus pneumoniae CDC3059-0... gi\|183574238, gi... - gi\|183574238\|gb\|EDT94766.1\| holo-(acyl-carrier-protein) synthase [Streptococcus pneumoniae CDC0288-0... ACPS_STRP4 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=acpS P... ACPS_STRPI - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=acpS PE=3 ... ACPS_STRPJ - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) ... ACPS_STRZJ - Holo-[acyl-carrier-protein] synthase OS=Streptococcus pneumoniae (strain JJA) GN=acpS PE=3 SV=1	137.0	[0..1]	[118..1]
ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=acpS PE=... ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis GN=acpS PE=3 SV=1	137.0	[0..1]	[118..1]
ACPS_BACHD - Holo-[acyl-carrier-protein] synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM ... ACPS_BACHD - Holo-[acyl-carrier-protein] synthase OS=Bacillus halodurans GN=acpS PE=3 SV=1	136.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRGVGIDSV EVERMKKIVE KGDKFAKRVL TPKEFEQYQQ LKGKRKVEYL GGRFSLKESF  60
   61 SKAMGTGLGK YVGFQDIETL WDDLGHPVMT STKFSGNIFP SITHDDHEII TVVVLEELN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: