YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_GEOKA
Organism:	Geobacillus kaustophilus
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_GEOKA.

Description	E-value	Query Range	Subject Range
ACPS_STRTD - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=...	142.0	[0..1]	[118..1]
ACPS_STRT1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=acpS PE=3 S... ACPS_STRT2 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)... gi\|55737684, gi\|... - gb\|AAV63246.1\| holo-(acyl carrier protein) synthase [Streptococcus thermophilus CNRZ1066], gb\|AAV61...	141.0	[0..1]	[117..1]
ACPS_EXIS2 - Holo-[acyl-carrier-protein] synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 25...	140.0	[0..1]	[118..1]
ACPS_MAGMM - Holo-[acyl-carrier-protein] synthase OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC... sp\|A0L8S4\|ACPS_MAGMM - Holo-[acyl-carrier-protein] synthase OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC...	140.0	[0..1]	[124..1]
gi\|9798536 - gi\|9798536\|emb\|CAC03496.1\| hypothetical protein [Lactobacillus reuteri]	136.0	[0..1]	[116..21]
gi\|221321806 - gi\|221321806\|ref\|ZP_03603100.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili... ACPS_BACSU - Holo-[acyl-carrier-protein] synthase OS=Bacillus subtilis (strain 168) GN=acpS PE=1 SV=1 ACPS_BACSU - Holo-[acyl-carrier-protein] synthase OS=Bacillus subtilis GN=acpS PE=1 SV=1 gi\|221317530 - gi\|221317530\|ref\|ZP_03598824.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili... gi\|221312607 - gi\|221312607\|ref\|ZP_03594412.1\| 4'-phosphopantetheinyl transferase [Bacillus subtilis subsp. subtili...	136.0	[0..1]	[118..1]
ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=acpS PE=... ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis GN=acpS PE=3 SV=1	135.0	[0..1]	[118..1]
ACPS_LACJO - Holo-[acyl-carrier-protein] synthase OS=Lactobacillus johnsonii GN=acpS PE=3 SV=1 ACPS_LACJO - Holo-[acyl-carrier-protein] synthase OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533...	135.0	[0..1]	[118..1]
ACPS_GEODF - Holo-[acyl-carrier-protein] synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) G...	134.0	[0..1]	[117..1]
ACPS_STAS1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain AT...	134.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVGIGIDIV ELERIRSLLE RSRKFPERIL TPREKAQFGE LPPARQAEFL AGRFAAKEAY  60
   61 AKALGTGIGR HLSFQDIEIV SDEHGKPSIA ARRDGETVHL SISHSRDYAV AQVVIERLGP 120
  121 MTPADACHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits