YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311428
Organism:	Drosophila melanogaster
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311428.

Description	E-value	Query Range	Subject Range
FBpp0311427, Pbp... - The gene Pheromone-binding protein-related protein 3 is referred to in FlyBase by the symbol Dmel\Pb...	162.0	[0..21]	[174..1]
gi\|145651318, gi... - gi\|32135155\|emb\|CAD99000.1\| olfactory specific F protein [Drosophila simulans], gi\|195568613\|ref\|XP_... gi\|39840703 - gi\|39840703\|emb\|CAD91563.1\| Olfactory Specific F protein [Drosophila mauritiana] gi\|195502156, gi... - gi\|195502156\|ref\|XP_002098099.1\| GE24126 [Drosophila yakuba], gi\|194184200\|gb\|EDW97811.1\| GE24126 [D... gi\|194133525, gi... - gi\|195343851\|ref\|XP_002038504.1\| GM10580 [Drosophila sechellia], gi\|194133525\|gb\|EDW55041.1\| GM10580...	162.0	[0..21]	[174..1]
gi\|39840707, gi\|... - gi\|39840707\|emb\|CAE00444.1\| Olfactory Specific F [Drosophila erecta], gi\|194898937\|ref\|XP_001979019....	161.0	[0..21]	[174..1]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	149.0	[0..29]	[173..4]
gi\|37778933 - gi\|37778933\|gb\|AAO74646.1\| odorant-binding protein 3-2 [Aedes aegypti]	144.0	[0..32]	[173..1]
gi\|27414029 - gi\|27414029\|gb\|AAO12081.1\| odorant-binding protein AgamOBP1 [Anopheles gambiae] gi\|116117906, gi... - gi\|118791068\|ref\|XP_001231183.1\| AGAP003309-PA [Anopheles gambiae str. PEST], gi\|116117906\|gb\|EAU759...	142.0	[0..34]	[173..4]
gi\|58396184, gi\|... - gi\|58396184\|ref\|XP_321724.2\| ENSANGP00000017561 [Anopheles gambiae str. PEST], gi\|55233939\|gb\|EAA010...	141.0	[0..14]	[174..89]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEGPRSSG KERNGKSHIK MALNGFGRRV SASVLLIALS LLSGALILPP AAAQRDENYP  60
   61 PPGILKMAKP FHDACVEKTG VTEAAIKEFS DGEIHEDEKL KCYMNCFFHE IEVVDDNGDV 120
  121 HLEKLFATVP LSMRDKLMEM SKGCVHPEGD TLCHKAWWFH QCWKKADPKH YFLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits