YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3689-PC
Organism:	Drosophila melanogaster
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3689-PC.

Description	E-value	Query Range	Subject Range
gi\|116132312, gi... - gi\|118778290\|ref\|XP_308558.3\| AGAP007242-PA [Anopheles gambiae str. PEST], gi\|116132312\|gb\|EAA04203.... AGAP007242-PA - cleavage and polyadenylation specificity factor subunit 5\|protein_coding\|2L:44512338:44515161:-1\|gen...	403.0	[0..3]	[237..2]
gi\|108880136, gi... - gi\|157118316\|ref\|XP_001653167.1\| pre-mrna cleavage factor im, 25kD subunit [Aedes aegypti], gi\|15710...	397.0	[0..3]	[237..2]
gi\|66499810 - gi\|66499810\|ref\|XP_624522.1\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X)-ty...	381.0	[0..1]	[237..3]
CPSF5_DANRE - Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1	381.0	[0..8]	[236..7]
gi\|194208617 - gi\|194208617\|ref\|XP_001915145.1\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X... CPSF5_MOUSE - Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1 CPSF5_RAT - Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 gi\|53733680 - gb\|AAH84013.1\| Unknown (protein for MGC:98181) [Xenopus laevis] gi\|73950369 - gi\|73950369\|ref\|XP_535298.2\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X)-ty... gi\|126296153 - gi\|126296153\|ref\|XP_001364759.1\| PREDICTED: hypothetical protein [Monodelphis domestica] tr\|G1TD91\|G1TD91... - pep:novel chromosome:oryCun2:5:12760904:12781768:-1 gene:ENSOCUG00000017224 transcript:ENSOCUT000000... tr\|M3WA00\|M3WA00... - Nudix hydrolase 21 OS=Felis catus GN=NUDT21 PE=4 SV=1	379.0	[0..8]	[236..7]
gi\|165971084, gi... - gi\|89267892\|emb\|CAJ83328.1\| cleavage and polyadenylation specific factor 5 [Xenopus tropicalis], gi\|...	379.0	[0..8]	[236..7]
CPSF5_XENLA - Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1	378.0	[0..8]	[236..7]
CPSF5_PONPY - Cleavage and polyadenylation specificity factor subunit 5 - Pongo pygmaeus (Orangutan) NUDT21 - nudix (nucleoside diphosphate linked moiety X)-type motif 21 gi\|114662616 - gi\|114662616\|ref\|XP_510978.2\| PREDICTED: cleavage and polyadenylation specific factor 5 [Pan troglod... CPSF5_PONAB - Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1 gi\|123982654, gi... - gi\|123997321\|gb\|ABM86262.1\| nudix (nucleoside diphosphate linked moiety X)-type motif 21 [synthetic ... gi\|90079113 - gi\|90079113\|dbj\|BAE89236.1\| unnamed protein product [Macaca fascicularis] CCDS10760.1_1 - null CPSF5_BOVIN - Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1 ENSCJAT00000024679 - null	378.0	[0..8]	[236..7]
gi\|61371857 - gi\|61371857\|gb\|AAX43744.1\| cleavage and polyadenylation specific factor 5 [synthetic construct]	378.0	[0..8]	[236..7]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSQVSNKS GSGWPRRGSQ GQADAASSNN NGTQKYTNQA LTINRTINLY PLTNYTFGTK  60
   61 EPLFEKDPSV PSRFQRMREE FDRIGMRRSV EGVLLVHEHG LPHVLLLQLG TTFFKLPGGE 120
  121 LNAGEDEVEG LKRLLSETLG RQDGVKQEWI VEDTIGNWWR PNFEPPQYPY IPPHITKPKE 180
  181 HKRLFLVQLH EKALFAVPKN YKLVAAPLFE LYDNSQGYGP IISSLPQALC RFNFIYM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2cl3A
Description:	No description for 2cl3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits