YRC Public Data Repository - Protein Structure Prediction

Protein:	Use1-PA
Organism:	Drosophila melanogaster
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Use1-PA.

Description	E-value	Query Range	Subject Range
USE1_MOUSE - Vesicle transport protein USE1 OS=Mus musculus GN=Use1 PE=1 SV=1	291.0	[0..3]	[249..15]
gi\|109503146, gi... - ref\|XP_214304.2\| similar to RIKEN cDNA 2010315L10 [Rattus norvegicus], gi\|109503901\|ref\|XP_001065114...	290.0	[0..3]	[249..15]
gi\|109123832 - gi\|109123832\|ref\|XP_001113101.1\| PREDICTED: uncharacterized hematopoietic stem/progenitor cells prot...	287.0	[0..2]	[249..3]
gi\|73986054 - gi\|73986054\|ref\|XP_865756.1\| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...	286.0	[0..2]	[249..16]
gi\|115497660, gi... - gi\|76620934\|ref\|XP_886012.1\| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...	284.0	[0..2]	[249..3]
gi\|117646422, gi... - gi\|167773831\|gb\|ABZ92350.1\| uncharacterized hematopoietic stem/progenitor cells protein MDS032 [synt... gi\|55648577 - gi\|55648577\|ref\|XP_512478.1\| PREDICTED: uncharacterized hematopoietic stem/progenitor cells protein ... USE1 - unconventional SNARE in the ER 1 homolog (S. cerevisiae)	284.0	[0..2]	[249..3]
gi\|23093864, gi\|... - gi\|24661401\|ref\|NP_648289.1\| Use1 CG14181-PA [Drosophila melanogaster], gi\|23093864\|gb\|AAF50314.2\| C...	283.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKLNVNIR TLLANCEELA KSEQNFWRLQ KFIKSLDTML AELEAMGDPQ SVKRIPGYLE  60
   61 RLQALKISTG YADVPGSTTK TPSQSSAVSE TGENALKEIR QLQNSKYHNE LRKELLQDSD 120
  121 ALRRRRGADE SSSSSGSANV QETSGENMNQ AAKYYTNAQE KITEHMLSLT RNLKEQTETA 180
  181 NRIIRRDTEV VSRSAGMADR NINSLGKEAE KLEQHSKKAY KCWLWLMIAF VIATFIGMVL 240
  241 FMKIMKKKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits