YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE38478
Organism: Caenorhabditis elegans
Length: 755 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38478.

Description E-value Query
Range
Subject
Range
gi|7511364, gi|1... - gi|7511364|pir||T28041 hypothetical protein ZK856.3 - Caenorhabditis elegans, ref|NP_505618.1| acid ...
783.0 [0..191] [755..4]

Back

Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPNLLMYLL FLALPLKSWG YQVLHLADFH LDVQYSINGD NKHMCHDDGT ERNTTLGEYG  60
   61 DYMCDAPKPL IQLAIDESAR IFPNPDLIIW TGDNVAHIDG YGWEIVLDAV NQTTSLLFSR 120
  121 FPNQTILPTF GNHDYAPSNG FESESSLYTK TWELWKGKLG DENKATFLKG GYYKYRLRNA 180
  181 TAVVLNTNLY YNANKAYVNF TNKVDPADQF AFLEKELSNA EKCPNRISEN CTSIVHIVAH 240
  241 IGPGVFEKTP NFTWFRDEYN ERFLDLTVRY ANSIGWMIFG HHHTDTFHLI KDSKENNVQL 300
  301 ALMAPAVTPW FSDLPGAGAN NPTFRVYETD AYSKIQDIST YFINLDDLNK NKSTPFVFEY 360
  361 SFKDAYGITG DINPTTMSAL LDKMKNNDTL FKKYIDYNTA FWNPQMPLGV YRGAQLCSME 420
  421 YSDYPRYYSC LSKYT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 1xzwA
Description: Sweet potato purple acid phosphatase/phosphate complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [436-673]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSATRSLNIP LFSLFAIIYT ELFLFLSFSK WVLHFQLFSD IHTRYKNSTY QHPKKKEKSP  60
   61 KNAILINLKN TLGGEKFTVE DVKQELAPFG IIRAVQICPI DACQAFVVFQ NDYERSARQS 120
  121 VSRLLELTSG TMFVNGYMWT ICRPVKCNHV ARTHEEREVE EPGITTSRGV TVDELSGIFA 180
  181 SFIQQNSSVS QTSIFSDSTQ SFSSYSLFSR SRTVSSSSSQ YAESCDSSAT ITPFSYYP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [674-755]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQQSTGFLNL PPPYHTLPDT AFFRRTKIIP PPPMRQEIAP VTQQIMNCYI NSIRKGDSEI  60
   61 GRQRQLSLCS KMELEYNWTG SL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle