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View Structure Prediction Details

Protein: CE38671
Organism: Caenorhabditis elegans
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38671.

Description E-value Query
Range
Subject
Range
gi|68396885 - gi|68396885|ref|XP_683221.1| PREDICTED: similar to retinoid X receptor-alpha [Danio rerio]
229.0 [0..2] [301..231]

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Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFRRAVNSK KPPKSCNPGE CPQRCLIAEF KQKCPRRKFY ECINANMRIA SFDIYSNKFK  60
   61 LIQDLMSSDA ERQKIFYTCH VTADLNFEEM LDPKLVKLCK KEMDVVFTSH DWVAIEAFTT 120
  121 LEFMKRIHFV KMLNADEANL ILKHSFFTLS IVFMAGRSYF DKKEFMVFPG KVDVFPEEIS 180
  181 DQYPLDLLNR IRCRLISKFI ELRITTEEFL LMVITYFCQI SSMLVGSSAK RIIEEYLSIY 240
  241 LSTLGINCNF RFQKHGRIRY LNIIFLSQLI EKTIEDLAQL FTLFQLNQPT LPLRKLVKES 300
  301 L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.39794
Match: 1z5xU
Description: hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle