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View Structure Prediction Details

Protein: CE38670
Organism: Caenorhabditis elegans
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38670.

Description E-value Query
Range
Subject
Range
gi|109019327, gi... - gi|109019327|ref|XP_001085313.1| PREDICTED: retinoid X receptor, gamma isoform 3 [Macaca mulatta], g...
252.0 [0..5] [293..173]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHRKHCISS DQDAKTYIAH PNCRFCSFKR MVLSQDVNLQ FTTIKIASMD LAGLINNLSS  60
   61 LNINRNEYFM DYYAKEKSSV DNAVISTINF IKKPPYLVFS MEEWTSINQL STIDFIKKFD 120
  121 FVNQFSCYSD KSKFIHGVRF KSAIFSTSMR VFNEKKSYMH FPGNVDIFPE HSSQLFNPHF 180
  181 LNKIRSQLIG KLIELDITKN ESLLLSALFL CSAVHPDIST EGKNLLYKYQ QYYSAALINH 240
  241 CCLTNQQNAP SRYSELLSLY QIIEETHQKV NNFAILYRMK MPHKIGIGIN KFE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1z5xE
Description: hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle