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View Structure Prediction Details

Protein: CE38928
Organism: Caenorhabditis elegans
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38928.

Description E-value Query
Range
Subject
Range
gi|238785693, gi... - gi|77956875|ref|ZP_00820950.1| COG1230: Co/Zn/Cd efflux system component [Yersinia bercovieri ATCC 4...
246.0 [0..69] [350..10]

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Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPELLPLI SRKSPVKYYH NENISFFEKM RRQKSKKEYY SRLEKLNQLY EEDDKLLEGI  60
   61 TQPEEHEQST DRWLANISIA LNLTLLFTNL LASILSGSLS IVSTFVDSLM DVTSGLIIGI 120
  121 CLKLIRNTNM FNYPRGRNRL ELVGVIICSI LMGISNTLLV MESIRSILEG DINPVMNITT 180
  181 ISIMLGGSAV KIILCLICYK RGSSSSIVLA MDMRNDIATS IVAIICATVG DRYWPYADPL 240
  241 GAILVCGVIA TSWYGHAIGH VPHLVGRRAE SEKLSRILKI VIEHDERIKY VDHVMVYHTT 300
  301 LEALAEVHIV MDENLPLKVT HDIAQKLEQK LMMLVFVERC FVHCDYECDG DK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.522879
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
transporter activity 0.0225298510244101 bayes_pls_golite062009
transmembrane transporter activity 0.00888573638791978 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle