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View Structure Prediction Details

Protein: CE38988
Organism: Caenorhabditis elegans
Length: 593 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38988.

Description E-value Query
Range
Subject
Range
gi|46123641, gi|... - gi|46123641|ref|XP_386374.1| hypothetical protein FG06198.1 [Gibberella zeae PH-1], gi|42551711|gb|E...
610.0 [0..4] [568..57]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGHPDSES SAISPSRRNI RMSSSGASES EVETCDENVG LLGSRGKKVK HERSNRAEQT  60
   61 APLHRPLGSH ADEATIEFGG RS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYHDPYTSDD ELLHTGSDAY GSTVGATISL KFNEACRAIH NGHYPQRIAQ GSSGSYFVKN  60
   61 MHDEIIAVFK PKNEEPYGSL NPKWLKWIHR VFLPCCFGRS CLPPNQGYLS EVGASLVDEK 120
  121 LKLGIVPPTG VVELAAPTF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YYDRIDRAKA RTKERIQSRY PNIGRRFHRI GLPEKTGSFQ LFVKGYQDAA HWLRTWVNQP  60
   61 ETAPPPVTQR EFQFLFEKLV ALDYIIRNTD RGSDNWLIKY ILADVIDRAP VHNNDVPCDP 120
  121 ANAKPQVPGD EKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [355-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDFVDSEAKP DAGTARVVDD PAPAEVEWAD VSIPTVDVAA IDNGLAFPFK HPDEWRAYPF  60
   61 GWALLPQAQI PFSDDIVDLL LPKLDDTNWV RELCGDLRRV FKNDKGFDKK IFEKQMSVMR 120
  121 GQIFNLREAL MKKKSPYQLI QMPPQLMVEV KQKKKKSRRS RNADYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [521-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPNYDSDAS TVVNTSGNVD VEQPGPSTSA AAAATAGPST SDAGAASSTG GSKSWQETYE  60
   61 QKVQTKAPFF RWW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle