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View Structure Prediction Details

Protein: ubc-3
Organism: Caenorhabditis elegans
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc-3.

Description E-value Query
Range
Subject
Range
gi|39589388, gi|... - gi|39589388|emb|CAE74417.1| Hypothetical protein CBG22149 [Caenorhabditis briggsae], gi|187022032|em...
gi|157745101 - gi|157745101|ref|XP_001667647.1| Hypothetical protein CBG22149 [Caenorhabditis briggsae AF16]
218.0 [0..1] [243..1]

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Predicted Domain #1
Region A:
Residues: [1-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKASTSSG ALRALTMELK NLQSQPVEGF TIDVNEDNLF VWTVGIYGPP KTLYQGGYFK  60
   61 ASIRFPSNYP YSPPSMKFTT KVWHPNVYEN GDLCISILHS PIDDPQSGEL ACERWNPTQS 120
  121 VRTILLSVIS LLNEPNTSSP ANVDASVMYR KWKEDQDPEY AKIVTKQVEE SKKVAQKDGI 180
  181 QVPETIEEYC VKWAPPQQDD VFDDIDYNDD FGCDYDDDEE EEDEDECGSD YNDDDEDSGQ 240
  241 GEN

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Detection Method: PSI-BLAST
Confidence: 44.0
Match: 2ob4A
Description: No description for 2ob4A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle