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View Structure Prediction Details

Protein: catp-7
Organism: Caenorhabditis elegans
Length: 604 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for catp-7.

Description E-value Query
Range
Subject
Range
gi|89268073, gi|... - gi|89268073|emb|CAJ83211.1| ATPase, Na+/K+ transporting, alpha 1 polypeptide [Xenopus tropicalis], g...
423.0 [0..1] [602..373]

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Predicted Domain #1
Region A:
Residues: [1-604]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNNYQTLS QNVVRAIATC HTLSKINNEL HGDPLDVIMF EQTGYSLEED DSESHESIES  60
   61 IQPILIRPPK DSSLPDCQIV KQFTFSSGLQ RQSVIVTEED SMKAYCKGSP EMIMSLCRPE 120
  121 TVPENFHDIV EEYSQHGYRL IAVAEKELVV GSEVQKTPRQ SIECDLTLIG LVALENRLKP 180
  181 VTTEVIQKLN EANIRSVMVT GDNLLTALSV ARECGIIVPN KSAYLIEHEN GVVDRRGRTV 240
  241 LTIREKEDHH TERQPKIVDL TKMTNKDCQF AISGSTFSVV THEYPDLLDQ LVLVCNVFAR 300
  301 MAPEQKQLLV EHLQDVGQTV AMCGDGANDC AALKAAHAGI SLSEAEASIA APFTSKVADI 360
  361 RCVITLISEG RAALVTSYSA FLCMAGYSLT QFISILLLYW IATSYSQMQF LFIDIAIVTN 420
  421 LAFLSSKTRA HKELASTPPP TSILSTASMV SLFGQLAIGG MAQVAVFCLI TMQSWFIPFM 480
  481 PTHHDNDEDR KSLQGTAIFY VSLFHYIVLY FVFAAGPPYR ASIASNKAFL ISMIGVTVTC 540
  541 IAIVVFYVTP IQYFLGCLQM PQEFRFIILA VATVTAVISI IYDRCVDWIS ERLREKIRQR 600
  601 RKGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.045757
Match: 1iwoA
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle