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View Structure Prediction Details

Protein: cogc-4
Organism: Caenorhabditis elegans
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cogc-4.

Description E-value Query
Range
Subject
Range
COG4_PONAB - Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii GN=COG4 PE=2 SV=1
gi|55730952 - gi|55730952|emb|CAH92194.1| hypothetical protein [Pongo abelii]
294.0 [0..11] [295..10]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEPILHSKF LSGLPAGRKN GVRHGEKPEK VGEKQFDFTR KIRELRLELE IKKREEERIE  60
   61 KDIAIILEEN TIDGGEQNRS FGLAVTRLNN HMLVVENSAK QLTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALKNISVLAD TISGRVSALD VAKTRVVGCL QLAGDMRDLG VCAEGIDDAI RSEDFETASQ  60
   61 HIHRFLTLDQ AVFQIREFKQ KDATDSIRHS YEVLSSAKER LSKILKSRLT ESVQKGDVAE 120
  121 MQRFIKMFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [234-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIHEPDEGLQ RYSVFLNQKI DKLAEDNLAI VSLLNVETID EAMEVWHNSK AMTSSATIRT  60
   61 LTLPEVRKVL ALRADFPTVA IKSIE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle