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View Structure Prediction Details

Protein: CE38571
Organism: Caenorhabditis elegans
Length: 103 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38571.

Description E-value Query
Range
Subject
Range
gi|86438323 - gi|86438323|gb|AAI12635.1| SNRPB protein [Bos taurus]
100.0 [0..20] [103..2]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDDQSTDLI QLKGHENAKK SEAHLKVLEY IGKRYEIRMT DGRYIRGTMI ATDKDANMVF  60
   61 NKADERWDKD PQLKGVRFLG QAMISKKHVE SMHALPDPKE TEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.30103
Match: 1n9rA
Description: Small nuclear ribonucleoprotein F, Smf
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle