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View Structure Prediction Details

Protein: CE38647
Organism: Caenorhabditis elegans
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38647.

Description E-value Query
Range
Subject
Range
gi|157745927 - gi|157745927|ref|XP_001668060.1| Hypothetical protein CBG03913 [Caenorhabditis briggsae AF16]
gi|187036116, gi... - gi|39595285|emb|CAE60322.1| Hypothetical protein CBG03913 [Caenorhabditis briggsae], gi|187036116|em...
278.0 [0..1] [216..6]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECDETKLSD GASGWVPSIP TDIDSKDTPL LDISSQAIWA LSSCKSGFGI DELLSDSVEK  60
   61 YWQSDGPQPH TILLEFQKKT DVAMMMFYLD FKNDESYTPS KIQVKMGSSH QDIFFRQTQT 120
  121 FNEPQGWTFI DLRDKNGKPN RVFWLQVQVI QNHQNGRDTH IRHVRVLGPQ RSRVSTTNRI 180
  181 FTGEPHGPIP DKNITNFDDE DFANFIDHSL VHLSLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.522879
Match: 1jhjA
Description: APC10/DOC1 subunit of the anaphase-promoting complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle