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View Structure Prediction Details

Protein: CE38564
Organism: Caenorhabditis elegans
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38564.

Description E-value Query
Range
Subject
Range
CE38563 - status:Confirmed UniProt:Q2Z1N7 protein_id:AAX88817.1
302.0 [0..1] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNFQNFDN VNSTNEQSGA FGGNIGDRNI LVGGSVGATS SAAPSGGVFD DSQSTTSTRK  60
   61 GNFFSFEYYQ QFFDVETDQV IKRLLNSVIP THRNYIQDFL QPIPDLWGPF WVSVTLVFAI 120
  121 GIFGNLAQFI ENDGAKGTYG SDFRMVTSAS TLIFLYVVIV PLLLYGLLWN RRSELLHPYV 180
  181 DLVCLYGYSL AIFIPVSVLW IVDIGWFRWA LIFASVGLSG TVLARAIWPA VQNDNNKMIA 240
  241 FGTVISVVVL HFLLAFTFKV YFFDS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 1q16C
Description: Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.191950702752689 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [266-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIVVEFYFD AMHPAAGSRA PLSPAAPAAL LIDTTTVIMI QNATVPAPEA PNQKEAATNT  60
   61 ETTTVVAVKS DDKKRESAEV TKPDDAEPSA PENATSSPTT VPQVRKDEKI DQKPTETTEK 120
  121 STEKLPAAEI SENSTEAAAA ATNSTEKNQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.75
Match: 2grxC
Description: No description for 2grxC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle