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View Structure Prediction Details

Protein: CE39186
Organism: Caenorhabditis elegans
Length: 223 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39186.

Description E-value Query
Range
Subject
Range
gi|157753870 - gi|157753870|ref|XP_001680647.1| Hypothetical protein CBG07093 [Caenorhabditis briggsae AF16]
gi|187033627, gi... - gi|39586968|emb|CAE62903.1| Hypothetical protein CBG07093 [Caenorhabditis briggsae], gi|187033627|em...
359.0 [0..17] [218..1]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLSVIFWL KMVNSRLILL VFVPFSLAQL SLYGNWTPTV IRYCETLQSA TVPLTGGVTC  60
   61 GSSSYNVMNA FFTLPISSTL SLGLINVGWI TSEALKSQSG FWKTCKPYLV RLFDGIYTDT 120
  121 TNACALMNNP PSGLPNCTED QTNLLYRSGS GYCMKEKVCG AFATIDFLAG PDNSSLLYSW 180
  181 STVTTNALVA SGFKKAGVCY GYKKVPNPGK NDTTMVEGDE QFY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle