| Protein: | dop-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 590 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dop-3.
| Description | E-value | Query Range |
Subject Range |
|
|
261.0 | [0..5] | [590..20] |
|
Region A: Residues: [1-330] |
1 11 21 31 41 51
| | | | | |
1 MVVLWRVAAG VFLPLVPTMA VFGNVLVIMS VFRERSLQTV TNMLIVSLAV SDFMVAIGVM 60
61 SFGVYYEWND FKWGLGSFFC HVYQALDVAC STASILNLLA ISLDRYIAIG HPISYAQYGA 120
121 RGGRAMISIT IVWGVSVAVA LPLLLGVNPM EENDECELAN PYFNMISSIF SFFIPCIAMI 180
181 ILYTIIFRRL RQRERARSLR QAQRSENDKI SSALLGGAQI ARQMGKHFKN RTDQILLEIS 240
241 FQTSSFPTMS ESSEDASTIS PMINSFNNFL PKKTPYPSTS IPAIPECGSM PNLTIIERPE 300
301 AEKEKEISIM DLRDTVEMLD DKYSSAILTS
|
| Detection Method: |  |
| Confidence: | 41.221849 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [331-590] |
1 11 21 31 41 51
| | | | | |
1 FQTSRSFGEE LEEILPFIDG SNSVKHSREQ LHTTRSNTST TRLLDVKPEL RSISVPSIQD 60
61 EKKLSQKSND LPFSHQNGTH KQKLLPNPGI LMKSKSTTLL KTNGYMDTDS LNRNSHKKSL 120
121 ADLLANDEFS FSDSMRVYKN RLFKSLSRAT SGWNKPRPSR HMVKKATKQM RREHKATVTL 180
181 AVVLAVFLFC WLPFFVLHLS NSICLIIDEN SACVGFLPLY LATWLGYLNS SLNPLIYTVF 240
241 DQRFRNAFRN ILSCGIFKKR
|
| Detection Method: | |
| Confidence: | 5.23 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
