YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE37848
Organism: Caenorhabditis elegans
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37848.

Description E-value Query
Range
Subject
Range
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
187.0 [0..26] [227..1483]

Back

Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLQYLIFL FSSLLFAGLA LSSAQVAVNG PFMGRYYVAA KPVLAPGVAP VAAPVLAAAP  60
   61 TVLAAPAPLL APPAPLLAPP APV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [84-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAAPAFAAP APVFAAPPAP VLAAPAPFLA PPVPPVAPIV SAFAPRPVLA APAFAPAPIL  60
   61 APRPVLAAPA IPAFAPAPLL APRPVLAAPA IPAFAPAPII APRPVLAAPA IPAFAPAVPA 120
  121 AIPAYAPFAR SAFLIGGNKA KTVKA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.35
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle