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View Structure Prediction Details

Protein: klp-12
Organism: Caenorhabditis elegans
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klp-12.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
395.0 [0..1] [377..1300]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDANANPT VDVGADVGDS DERKEKKKRI KQSRIVPVKD GMRGNVITRT HTLEGHARGV  60
   61 LSVDVNEKLM VTGSKDRTAK LWDIEACREI RTLGIHPNNV HLVKFVPFSN YVFTFSMFEA 120
  121 RAWDYRTPEC ICVKVLNSSG QVNEGDSIDV SQVMPRQNTI PFLETLITAA DVDPTGQLLF 180
  181 TSFSAYVRVW NLREWKPLGR LNAASHSPKS EVSCLRTTMT PEGSILAYTG SRDHYVKEYE 240
  241 VGLGTGVIES KCEFTPPHYD NVTAVLPLNG HLYTASKDVN IMKFSLKDGK REHLELRAHQ 300
  301 QYIQSLTGFG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.09691
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [311-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKGKELLVSA CKDGTIRFWD VGSSSRMKLV EEYSKAHQEG INDMCSTKSM LFTASGDSTV  60
   61 GFWKSNAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 1erjA
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle