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View Structure Prediction Details

Protein: egl-9
Organism: Caenorhabditis elegans
Length: 702 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-9.

Description E-value Query
Range
Subject
Range
egl-9 - status:Confirmed UniProt:O45918 protein_id:CAA94893.2
502.0 [0..1] [702..1]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAPNDDCE IDKGTPSTAS LFTTLMLSQP SSSTAVLQCT YCGSSCTSSQ LQTCLFCGTV  60
   61 AYCSKEHQQL DWLTHKMICK SLQTSGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2oddA
Description: No description for 2oddA was found.

Predicted Domain #2
Region A:
Residues: [88-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSNLMPQAA PAVMAPIPPT VSFDDPALTT SLLLSLQNNP ILNQTISNFP PTFSITSKTE  60
   61 PEPSIPIQIP QRI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [161-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTSTVPFSS EGSAFKPYRN THVFNSISSE SMSSMCTSHE ASLEHMSSAS LAMFPTSSTA  60
   61 QSDISRLAQV LSLAGDSPAS LALVTTSVPS TASTATIPPP ATTTSSATSS GKSETITVGK 120
  121 EKIIQTDDPD IQIIETEGGS KPTVSRTRKR PTPSNSADPK INYKDHNKNV VYSTTLQEHQ 180
  181 KHLQNRGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [349-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSIHQAMVL RLRYIAEHVI RSLNEFGWAV VDNFLGSDHY KFTAKEIERL YERGLFSPGQ  60
   61 LMEAKHKDEF HIKDIRSDHI YWYDGYDGRA KDAATVRLLI SMIDSVIQHF KKRIDHDIGG 120
  121 RSRAMLAIYP GNGTRYVKHV DNPVKDGRCI TTIYYCNENW DMATDGGTLR LYPETSMTPM 180
  181 DIDPRADRLV FFWSDRRNPH EVMPVFRHRF AITIWYMDKS ERDKALAKGK ESDAACASKK 240
  241 END

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.69897
Match: 2g1mA
Description: No description for 2g1mA was found.

Predicted Domain #5
Region A:
Residues: [592-702]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSSSLNSLI GSLLRPRKNP STHDLSKLDL RLFPSTSSDP ALVSAADEDR GVSLSTFNVA  60
   61 HNHMERTTSL QSISDHFRSE RSHERRSSTS SDQDLDEGLP PPPSTNPEYY I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle