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View Structure Prediction Details

Protein: sax-2
Organism: Caenorhabditis elegans
Length: 714 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sax-2.

Description E-value Query
Range
Subject
Range
gi|4902699, gi|1... - gi|4902699|emb|CAB42442.1| hypothetical protein [Homo sapiens], gi|12957488|ref|NP_075463.1| hypothe...
927.0 [0..2] [701..2266]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIRSVSRFL QGNNWPDVSK IYKTIVEKWR NENPDQNAHF SLEVTGPTGT SGVVTVKPSE  60
   61 EIGKSEKVSE EKSSEKPSIE VATTSLKRYP PAHMRVRDKL VGILSASGLR IGLPSSVSLV 120
  121 FSRSDLGSAT SSTERICASS QEVASTMSLP DPSQSGITDS FPRVFKEFDF LEAEHDSVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETADSCFGWL STMRPTREKD DERASIRSSL RNLSSGGQGG EEEEEEPEED EESESHEEEE  60
   61 NSESDDLPRK VEDDDLEEED EDEEERTPCP SECCDDDRED VEMMLRQDIE AYASRGGSVA 120
  121 ASSMADDDLR SRLTNNIVSI SSQMTEHRHL EEENTSVDGS SVCAYSNASM LASEY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [355-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNRTRSLRI QCSHHLDSRI EREFSMSVNE INESNDCNLL AYGTLLSTQL YKSSCGKVCA  60
   61 LLRDASHILT NRAMSRSFAS AQETLCNVVD IPFLFVTEQF LRNSPICQRL KFTLNELKEH 120
  121 WETFDERRDQ CQKGINSLRS AYKLSALGGS TSSFSLTSEL DLGKLLNKLV FQVKLMID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [533-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALKDMSDAVK NSTSSQTYSL SPAILEHHRE LLMCASDDAA SSVNSSLSRL NIDDSISRSQ  60
   61 HSCDSLVLLL ANKRYTQALQ AVRQLRRTYG EEYGCCETVD VDVLLLLFCR SHSLKAWALV 120
  121 GASSEELTRQ SELLREANAE LASCLRRNAQ SLQNMERMTP SMGSASMTES FAQLPSSSDH 180
  181 YD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle