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View Structure Prediction Details

Protein: rde-2
Organism: Caenorhabditis elegans
Length: 570 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rde-2.

Description E-value Query
Range
Subject
Range
rde-2 - status:Partially_confirmed UniProt:Q19672 protein_id:CAA95803.3
1097.0 [0..1] [570..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNGYHSYFP PNHYYAQSQP SSSYNPQPQI QQPQTQIYGL VVGYNKYGNR NYLFYTKNID  60
   61 GFVEISGNIQ SLQIGRWLKL TVCQNFVGQY VLDSSNSC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYENWDVLPN HRNSSARFFP KYEANDEGEI LITARFDVIV DRKNNLYDFT SYDISYDHII  60
   61 DDFSLIKSSC QHYDGRSFIV EAQASLAGWV ALSVHEDPQK LHTCDALPNP VVDSDVQYLH 120
  121 DTRLLDIMTG NGYVQTPETD VQDQQSSQHQ EDVHSQMNSQ TSDSYNSSRV VSENREIPPE 180
  181 TFRSQSIELN QVDSSLSQTT ISSRAAPVID SNQLSDEDEI D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEDTYGTRGT SNIPMRPFIK DLAPTMLQLL RQDKTDSEKP QSALCTVVQK IDGFAILYTA  60
   61 KRDVINVLLQ ERSCEGLERS PQLGDVAFFD ILPRRIETKD RLIFKIPYTH IAVKKKPDTP 120
  121 DSLLKIDCFK NSVRCFGGVL EMKVKIALSK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [470-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PELVVEQYHD NTEMNSDHHF YYLKATNGVL VTIPKERLLN HLNSKLSADF DLIAWVVHRK  60
   61 PIGNVSLHIG KGGEAYQQFT NGDIRELPPL SSNQYFMNVR K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle