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View Structure Prediction Details

Protein: CE41060
Organism: Caenorhabditis elegans
Length: 550 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41060.

Description E-value Query
Range
Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
307.0 [0..67] [543..104]

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Predicted Domain #1
Region A:
Residues: [1-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSSNSSE DSINLPENGA KLEFLEKEPE QVHGLDDYIQ MGKYVLLVCL AAELLILPQV  60
   61 SSMFYMMYAG AAPRVISCDN IVFDSLLEGK EICFELDKMG NCSHPEFQYQ FRSINVEYNY 120
  121 FCNTSKLVKN SISVQMFGVL TGSIVFGQIS DSFGRKIGSQ VASLGMLIGW LIVVQSRNLL 180
  181 HFTISRTIVG FFTGGSISII NVFIMENIPK KHRMWINMAI TWSPNMPIYS YFAWLASDWK 240
  241 SLAYINAFMC IPGILFFQFF IHESPRWLVT RGKISEAVQV LQRQLKTSNQ ENLIHEDFEE 300
  301 NLRMEYAKTQ AQNTRKTKFS YYHLFVTPKL AITTIVLAYS YCATSIINYG VLFNMEKLSG 360
  361 SIYWNSVYTG LMRYACNLSF GYADLKFKSI GRKFIHTSGL VIIVLSLSLV VGSYALHLNH 420
  421 EMKDVIRISI LLASSMTSQI YIADGIVSAE LFPTPIRTIG YAFLQLWNRV GVVLSPFIFY 480
  481 LADYWLALPF CFMILFSLID TFSFECLLPE TKGRHLVEHM PPRHQWWFGA GKEEIVEVEE 540
  541 PDTELAKIEA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle