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View Structure Prediction Details

Protein: CE41107
Organism: Caenorhabditis elegans
Length: 647 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41107.

Description E-value Query
Range
Subject
Range
gi|115746587 - gi|115746587|ref|XP_780674.2| PREDICTED: similar to ankyrin 2,3/unc44 [Strongylocentrotus purpuratus...
611.0 [0..3] [646..27]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVGVLYPA FTSSPLFVED PIVILKGSIE ELVLEVQETA GTQQIGAPSA LPESRVLVLY  60
   61 TGGTIGMKTT DGVYCPVPGY LPEVLRDIPP LNDRRYIEES YSNVAVRPYS LPPVRNMKKR 120
  121 VVYWIVEYEP LLDSCDMTFD DWIRIATDIK KAYHKYDGFV VLHGTDTLAY TASALSFMME 180
  181 NLGKPVIITG SQIPVAEVRS DGMENLIGAL ITAGNFDIPE VCVYFNNKLM RGNRTVKLDN 240
  241 SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.69897
Match: 2p2dA
Description: No description for 2p2dA was found.

Predicted Domain #2
Region A:
Residues: [243-647]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEAFDSPNMH PLAQMAINIK VNYDSIFRSD MVAAFTVHEN LCRDVGMLRI FPSMTIESVR  60
   61 AFLQPPTRGC ILQTFGSGNM PTRRQDIIMA LKEAIARGVM VVNCSQCLKG QVDVNYATGK 120
  121 ILYDIGVIPG SDMTSEAAMA KLCYVLGKDE WDLPMKRSML QSNLRGEMTI ASKGAMRELD 180
  181 IIPHIAKCLR VSSSQEVQLL RDIILPPMFC NAAKTNDVEI LKSLKAAGVN FSATDYNLRT 240
  241 ALHVAASNGH LESVNYLLKI GTNVHIKDMF GYNALVCAVK AKAMDCIIAI RDAGGFIDAS 300
  301 AQKIGVELCL AVYQNDMELL KCNEAAGTHM GEKDYDNRTA LHVAASLNKP EIVAYLLQCG 360
  361 LNPHEKDDFG ITPMDEAKRR NLQNLMDMMA EHQALTNNDE VFHLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 1n11A
Description: Ankyrin-R
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle