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View Structure Prediction Details

Protein: CE40163
Organism: Caenorhabditis elegans
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40163.

Description E-value Query
Range
Subject
Range
gi|39589918, gi|... - gi|39589918|emb|CAE60916.1| Hypothetical protein CBG04633 [Caenorhabditis briggsae], gi|187035420|em...
gi|157765170 - gi|157765170|ref|XP_001674928.1| Hypothetical protein CBG04633 [Caenorhabditis briggsae AF16]
348.0 [0..1] [424..1]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTRSRSKN NRAADKDRSK ERYAYRPRST FEESDALVGF KTIDHYLQYD CLLTREELHR  60
   61 LDEHVYSAVD TSWLDELCMK KFWEAVVLYY PLWVAPNLLT LIGLIVNLTT VLVLSFYCPT 120
  121 AT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [123-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETAPAWAYFL AAFGLFVYQT LDATDGKQAR RIGASSPLGE LFDHGCDSAS QVFVTLNVCY  60
   61 ALQLGSVRCG VFIACLISVS LFYTAHWSTY CTGQLRFARF DVTEAQWSII SMLLCTSLFG 120
  121 PKLWSVGIFG YALKHLLLAC VGLGTIYQAL GYLSVIFTDG VGK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.091515
Match: PF01066.12
Description: No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [286-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGSTVAGTSV LFPACPLLAV IVPYCMIYSK SASGVYDDLI VIFVLQFGAV AAKATNRLIV  60
   61 AHMSRSELSL WDWIYMGPIA LMINQYYDIK INEPTLLKYT TVYVYASLLV YCLFITRQIC 120
  121 DHMGIYCFKV TAPRAGSSK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle