YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: lips-5
Organism: Caenorhabditis elegans
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-5.

Description E-value Query
Range
Subject
Range
CE06436 - WBGene00011725 lipase status:Partially_confirmed TR:Q22420 protein_id:CAA98139.1
209.0 [0..1] [329..43]

Back

Predicted Domain #1
Region A:
Residues: [1-65]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLVPSILL ISTVLSQDIP EYGPISANFD AWLDRNGYGK YDYARLDLGT AGSFGGMSSD  60
   61 MEYFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1jkmA
Description: Carboxylesterase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [66-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSKDPVIFFH GNSDAALTAN NFSTGWTTTV QYFLNQGYTL GHLYGTSWGN TNTTAAVERD  60
   61 HDCVTVFRLR KFVEAVMDYT GAKQINIISH SMGVTLARKV ILGGYINADD GSCNIGKPLG 120
  121 NKVRVILGIA GANFGLCACV GHWLGVTWPT CNDDNGLWPG ETCYPNPMNG QCAASPLPSP 180
  181 CNGLTYSKFL MDLNNSRFKP AQHIFSMWSM GDDLIGDGNM VWGRPTSEIP FSDSNKIYKN 240
  241 YTHMETKLNT AADQFHIITQ LTIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle