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View Structure Prediction Details

Protein: CE40776
Organism: Caenorhabditis elegans
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40776.

Description E-value Query
Range
Subject
Range
gi|73959818 - gi|73959818|ref|XP_537109.2| PREDICTED: similar to GPI-anchor transamidase precursor (GPI transamida...
439.0 [0..1] [317..11]

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Predicted Domain #1
Region A:
Residues: [1-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHVLLIFCA IIATEALLNT GLQLKIDELF DTPGHTNNWA VLVCTSKFWF NYRHVSNVLA  60
   61 LYHSIKRLGI PDSNIIMMLA EDVPCNSRNP RPGTVYAARA GTNLYGSDVE VDYRGEEVTV 120
  121 ESFIRVLTGR HHPATPRSKR LLTDHQSNVL IYLTGHGGDS FMKFQDSEEL TNVDLAYAIQ 180
  181 TMFEDNRYHE MLVIADSCRS ASMYEWIDSP NVLSLSSSLT HEESYSYDVD TDIGVYVIDR 240
  241 YTHYTVNFLT KEVKALNSSA NMQDYIDSCP ARKCLSNTGV RKDHYPKDVK RVRVTDFFGS 300
  301 SRIFQHLSEE IVLDDEFWA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.15
Match: 1m72A
Description: Crystal Structure of Caspase-1 from Spodoptera frugiperda
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.446816200197746 bayes_pls_golite062009
binding 0.128865592323915 bayes_pls_golite062009
hydrolase activity 0.00345801703057891 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle