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View Structure Prediction Details

Protein: CE40533
Organism: Caenorhabditis elegans
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40533.

Description E-value Query
Range
Subject
Range
gi|157754789 - gi|157754789|ref|XP_001669738.1| Hypothetical protein CBG21575 [Caenorhabditis briggsae AF16]
gi|39583493, gi|... - gi|39583493|emb|CAE73951.1| Hypothetical protein CBG21575 [Caenorhabditis briggsae], gi|187022519|em...
274.0 [0..1] [258..1]

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Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFALLVVS LLANLADAIF IDSTGCGTTK MCMFRPRGCD PNLDCTIGVA LSVIAPNRMK  60
   61 VQMVAATIVP AVQQQYVAIA FSHDKFMGND SVSECVISNM GEFVGFEPEV YVSYNKGKSN 120
  121 DRVFLNDDEH AEMFTDLASE VVDTRLVCEF TQQIMPQIDN KNGLIWNLNS PFYLMAATGS 180
  181 AQPDEVNVHE LNRDSHSFPI TSEEMFNPVT FGNNFEHPTG FAPKINTNRI EKRPMRPTES 240
  241 PKVSASLVSL IPFVLSFFVM LF

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Detection Method: FFAS03
Confidence: 2.2
Match: 1d7cA
Description: Cytochrome domain of cellobiose dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle