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View Structure Prediction Details

Protein: prx-2
Organism: Caenorhabditis elegans
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prx-2.

Description E-value Query
Range
Subject
Range
gi|76634565 - gi|76634565|ref|XP_590234.2| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) ...
203.0 [0..3] [271..209]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRCLRVDQ LDAHVLDSEI RSIAQDSVDD VVNQMPLWVA RIFEKLRPEL KVTLEAVLWT  60
   61 HRFSRGASPG QEQMDIAYAG YTPKLITSHF MVEVIVPYLT RRMSELSGRI DISRMYSKIE 120
  121 AIYELGSLLH FLYFLRSGGH STITESIFSL RNWNNHQPTI SSINYDTQNR ELMWHAFRDV 180
  181 ILLTYPFIEK ARQRI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.026872
Match: PF04757.5
Description: No description for PF04757.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKKQKLDRKF TSSIGSSDIE CVVCDKPSVI PMVGQKCGHV ACYTCIATSR NMTCPLCSEN  60
   61 AEPMEFLAKK LKNPILIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.39794
Match: 2cklB
Description: No description for 2cklB was found.

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Created and Maintained by: Michael Riffle