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View Structure Prediction Details

Protein: CE40081
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40081.

Description E-value Query
Range
Subject
Range
gi|157755761 - gi|157755761|ref|XP_001670224.1| Hypothetical protein CBG06148 [Caenorhabditis briggsae AF16]
gi|187034427, gi... - gi|39593817|emb|CAE62110.1| Hypothetical protein CBG06148 [Caenorhabditis briggsae], gi|187034427|em...
404.0 [0..1] [395..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGIDPRRMS SKMVADNLCR QPVTADKIEQ LRNREEKSAT VQCRENHAVA EELKKQISEL  60
   61 AHIRKSETVD SKIKKLESAV TSLREQSKPL KKALNTALYS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDTELLELVG QTTRETLLEI NGGAVIDPVD AGNKIGDALK QIETSVKAHT VDKSNWCDEW  60
   61 IVDDNMDEIN EMYDDMYKDA RLSENHRFAS RLALFHRLTP ELVFASSSKK DDDGPPHYKK 120
  121 FIQPAVYPFN IGCDFIVQLV DVERVEKQKK IREKVERGAK RKEPAALVKV SD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KARNVQSEEV SISKELQHVL KVLKKELKTR KTDQIDYYEL ITNPTSFSRT VENMFYVSYL  60
   61 MRDREVYLLE ENGVPILKKP TAVNDQEKLQ NDERNSTHGL TPLSFEQWKT LSQKYKTTII 120
  121 EPLDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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