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View Structure Prediction Details

Protein: CE40423
Organism: Caenorhabditis elegans
Length: 602 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40423.

Description E-value Query
Range
Subject
Range
CE35628 - WBGene00012012 status:Partially_confirmed TR:Q22769 protein_id:CAA94377.2
937.0 [0..2] [576..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTNNFNYGP RINFEKLHQH LPHSTIIPSE YLEPISASES KSTRPSESLA SGTSTLGSHW  60
   61 KRVDSSVKSD NTTAPPSSFS T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSDGTVVPSV YSVRSFDYPP LSESSVSLNT VSQVTTSTES SAASALSVGT RDFRKCINLQ  60
   61 MLGLDELDST LDRASEQFSD SFWKESTDYD QAVKKGEILW QKFEELIECL NEKSGDCTDE 120
  121 ELPAQGEKFL DYGTVILKTF RTKYRIEKFV RNTESVYITN NNTLEMILDN EKSVQKIRKN 180
  181 LSIIRKMEAY FLTVSENKDN RVKEFFRGIV NMVPTLPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [300-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQNERADIDH VIRNIEEDSK FENKYKCELI MRHLLATISN WDKETHGTNS NLGSSIWKSI  60
   61 PSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [363-602]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTASQNSYV SEVIESSSFE LANLSTDDSN LADLEGELRS ASIRRAVEGP KGIYEFGPWD  60
   61 TASIFSQFSN NSDGHTSIQS LQDHHSSYEL SSSDDHSILP SLSSRSVPNK IFENTVKEIV 120
  121 QDDLDLKTAL SIGEPIVAGL PRTPIDNETE VVRSCTQSDS ADTFNFSSVS LNEMVDDALH 180
  181 TAKGVESASA TNTSATNLLD ALHSSALKCG VAFNDLMTAI SSSSESVSDT QASHHSSASH 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle