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View Structure Prediction Details

Protein: prmt-6
Organism: Caenorhabditis elegans
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prmt-6.

Description E-value Query
Range
Subject
Range
gi|218321183, gi... - gi|218708164|ref|YP_002415785.1| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splen...
gi|85835662, gi|... - gi|86146605|ref|ZP_01064927.1| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio sp. MED...
201.0 [0..2] [229..42]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFPSEAYT EAQQKWLGRD HLITPTIKKA FGHILVGKEV LDVGCGNGHY SFDFLRWGAH  60
   61 KVFGVDNSEE MIQICKSSPD FENFNSKIDF LLGEVTNFHV DGASFDVATA FFVLQFLHKN 120
  121 DDVALAIQNI SRHLKSRGTF FGLIPNGVPG VRAPENMGLK LGAQIQKEPE SPFVDGEVVG 180
  181 INFYANGEVC GSSKIALHSR EFYEQCFKAA GFSQIEWIAP HFTDHAKNLL GEQFCFQFLN 240
  241 PPCDIMFKCV KM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.09691
Match: 2avnA
Description: Crystal structure of Ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from THERMOTOGA MARITIMA at 2.35 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle