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View Structure Prediction Details

Protein: CE41448
Organism: Caenorhabditis elegans
Length: 798 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41448.

Description E-value Query
Range
Subject
Range
gi|157774353 - gi|157774353|ref|XP_001665242.1| hypothetical protein CBG09978 [Caenorhabditis briggsae AF16]
gi|187031434, gi... - gi|39590741|emb|CAE65113.1| Hypothetical protein CBG09978 [Caenorhabditis briggsae], gi|187031434|em...
643.0 [0..1] [798..1]

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Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPTTSELK LSDNVMNEIS DMCITEYCKP NMSLMAQINE LFPTEQSLTQ LDSIIASVEG  60
   61 EIGELDNELA YLVETNANVS ERGEEALKHA QDAMIELEKS IGSIRERTKS SDEIVREMTR 120
  121 DIKQLDIAKR NLTASITTLH HLHILLTGVE SLGAWVDKKD YSSIARQLPA ILNVLQLFDA 180
  181 YKESDQIANL SGQLDKLKAS LTIQLAKDLK NAFQTGQLSD RITDMCRVAA ALEGNVKENF 240
  241 VKWFIEQQLS EYVIIYADNE EG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [263-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWLDKVDDRY KWFVRKLTDF ERAGLSNIFP ADWHMGRRLT SEFCTVTRDI LYRIMTRRRQ  60
   61 DLDWKLLGHA IQHTKMFEAL LTKRFPEKDG ISFE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [357-798]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAIWSVFDTF LDVFINAQEK TLNEFLDTCA SKIRSGEEKP SRESSTHAVP FPSSADMFLL  60
   61 LKKVITESSK LSSEPDALIR DVIGVVRVCL RGYATSCLVA FLPSLGSQQS GAANLFSLIR 120
  121 EEIAYPRLTP DQQFLVCCIL ATADWCAETS IQLQEKLSQR IPGVDISQET EAFYSITNQS 180
  181 LQVLVQDVES TCDAALQSIS KVNWTAVDCV GDESPFIGSM RAHLRQAVPL IRDMLSDRRK 240
  241 YFAHFCLKLA TQLAHKFVGS LFRCRTISTH GAEQLLLETH SLKTFLLSVP SIDSIINSKP 300
  301 PTAYVTSVNA ALTKAEMILK VVMCSLETVD EFVEQYIKLL PASDAAEMQK VLEMKGVKRQ 360
  361 EHSAVLNAYR LKIGASGSDP IQQSNSLTSR IGGALPTVGS AASVSEAFNA VVSMAADGLS 420
  421 DQAVTSSIDK LKRFERLVKR QL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 2fji1
Description: No description for 2fji1 was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle