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View Structure Prediction Details

Protein: CE39826
Organism: Caenorhabditis elegans
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39826.

Description E-value Query
Range
Subject
Range
CE37425 - status:Confirmed UniProt:Q965X3 protein_id:AAK68885.2
392.0 [0..1] [404..8]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNDSSKHKS DVKTEKVGSE IEKASNPTLE AYFTRISDGK NEISAEKLKS IFQQDLSGSL  60
   61 MKYLTGDTNS NLVTHQQFMD KFTPLYGTST DIYVKILQPV HHFLKVCSDS AGAGAIQGDE 120
  121 QFIKILVEEM TDGKTGDEAT QSIIRWRREN CEKFTQAVQN RVVSAVTDTK IIN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDYSSDILSP LQMWYLQSSL PAVYFPAKPT ETSGESHWTP LYTSLQHGIS TNRFETLVFD  60
   61 YRGPTVTIFR MKDGRVVVIA ADQEWRHSGN RFGGTFTSFF EIVPNIRRID GANSIYCNLK 120
  121 LRSSAYGLSF KNELKIEKDF DEILDIEVWG CAGAGTLADQ QKLKNWQKQQ TEKHKRVPLP 180
  181 GNWDDNPDKT LLEMAGFQFS TERAQMEMES KKRDAQAAYV EAATASETSE K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 38.537602
Match: PF07534.7
Description: No description for PF07534.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle