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View Structure Prediction Details

Protein: frg-1
Organism: Caenorhabditis elegans
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for frg-1.

Description E-value Query
Range
Subject
Range
gi|187027040, gi... - gi|39588932|emb|CAE69562.1| Hypothetical protein CBG15774 [Caenorhabditis briggsae], gi|187027040|em...
gi|157772817 - gi|157772817|ref|XP_001664473.1| hypothetical protein CBG15774 [Caenorhabditis briggsae AF16]
311.0 [0..1] [274..8]

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Predicted Domain #1
Region A:
Residues: [1-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGADYSAVK GGGLKLKAGK KNLFKVGKEK KKKNKDDKEK IDPDTVENGG WRKIADEFDM  60
   61 KGGTNVAIEV ASGAGSTRTY VAAMDNGKFT IGFPHPEGEG PNPEEIFALV KTPDDSKISL 120
  121 KTGFGRYVGV DSEYQLVAMA EAIGSREQFV LVFQEGKTAF QAVSSPLFLS TVPNKEGHIY 180
  181 VASRTATENE MVNIRTDAIQ EGPVDWRSVE DRKNARECET AYVKMYQHSK VDLKNRHIAI 240
  241 DVKDKKGVKK AQADGSAHEL LLDRRMKMKS DRYC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.30103
Match: 1dfcA
Description: Fascin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle