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View Structure Prediction Details

Protein: cids-1
Organism: Caenorhabditis elegans
Length: 315 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cids-1.

Description E-value Query
Range
Subject
Range
gi|109506377 - gi|109506377|ref|XP_214609.4| PREDICTED: similar to cDNA sequence BC021395 [Rattus norvegicus]
231.0 [0..1] [312..128]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFTEQTLR QKLTNLSNHP SSIQTTSAWL LQNHSNRELI IRVWLKTVKK ETHGSKIVNL  60
   61 LYVANDVSQN ARKTCPQFKD EFFPAIESSF RHAIELKNAK EVEHAIGKLI NVWKDRQIFT 120
  121 PSQCKRLHEV HQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 2diwA
Description: No description for 2diwA was found.

Predicted Domain #2
Region A:
Residues: [134-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKLSGSFPTP AVANKEHGKV AQPSQFVVEE AKKNAQDVLL SLKRLQNPPS TEREIRTELS  60
   61 KYPDNISCPE KLQSVRSSQE AQSLLVQNEE ALPMLEEYVK RLKNETNERE TLESNLNMLI 120
  121 ENVRMSIEHH EKLCREVKRR EDRIKADLLE VEKTFESLPD LAAEMPNAPL PTLEALFEKR 180
  181 KK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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