YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: acbp-7
Organism: Caenorhabditis elegans
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acbp-7.

Description E-value Query
Range
Subject
Range
gi|39591540, gi|... - gi|39591540|emb|CAE71116.1| Hypothetical protein CBG17969 [Caenorhabditis briggsae], gi|187025035|em...
gi|157775113 - gi|157775113|ref|XP_001665622.1| hypothetical protein CBG17969 [Caenorhabditis briggsae AF16]
219.0 [0..1] [214..1]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMWRTLLL TAVLFISITS ACNKNGEGCL LMRNVLRDPL RLSTWKVSSL NRAINQLQAY  60
   61 QQLFHEDKRS SD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGPLSEMIRR RRRMENALED FKRIRAQFVQ RKVLKYEFEL FTKFENHTRH VWGLYQQAIV  60
   61 GDVNVPKLNY MEIDEGEKSW MWRWINGNEK WHAWNKCRGL TKEEASEQYV EAVQKLKIDI 120
  121 QQLLINWKIE ISNEPTAAMN NNINNIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2fj9A
Description: No description for 2fj9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle