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View Structure Prediction Details

Protein: CE40194
Organism: Caenorhabditis elegans
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40194.

Description E-value Query
Range
Subject
Range
gi|157747757 - gi|157747757|ref|XP_001668973.1| Hypothetical protein CBG12771 [Caenorhabditis briggsae AF16]
gi|39595811, gi|... - gi|39595811|emb|CAE67314.1| Hypothetical protein CBG12771 [Caenorhabditis briggsae], gi|187029355|em...
159.0 [0..1] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKPSLNAAA KWMIRNTIVS NESLTPEINL HLITIASPLW MSTPDACPLP DPYWAFYWPG  60
   61 GQGLSRFILD NKPLFQGSEI VDFGAGCGSA SISASICGAK KILANDIDRY ALLSTKLNFH 120
  121 LNNLRDSKIQ YSSINFLDDK NERMSTQFFT DSKNIRKFIL LGDMFYDSDF AELLFSWLKK 180
  181 IQDAHMVRVL VGDPDRHPLA ESEYLQRYKT KFTKNQLAEF SLPGYVIKEH YGFNTAKVFE 240
  241 LKFQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 2as0A
Description: Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle